Forum for Science, Industry and Business

Sponsored by:     3M 
Search our Site:

 

The evolution of gene regulation

27.05.2009
How microbial neighbors settle differences

Even microbes are governed by the principle of supply and demand – at least at the genetic level. Not all of their gene products, the blueprints for proteins, are required at all times. That means most of their genes only become active when they are needed, as is the case in higher organisms.

In the simplest case, a transcription factor will activate the gene in question at the right time. Genes that are regulated in a somewhat more complex manner, on the other hand, are kept inactive by a repressor that is removed only when the gene is needed. Which of these two regulation mechanisms will develop is a question of demand, along the lines of a "use-it-or-lose-it" principle: if genes are frequently active, then, as a rule, they will be directly induced.

Genes that encode more rarely used proteins, on the other hand, tend to be kept inactive by repressors. LMU physicist Ulrich Gerland and Professor Terence Hwa of the University of California have now demonstrated using computer simulations and theoretical analyses that another – indeed opposing – principle also comes into play: "wear-and-tear". According to this principle, direct activation can lead to harmful changes. "Which of the two principles prevails depends on evolutionary criteria such as the population size and the periods over which environmental changes take place," says Gerland. "Our study may serve as a useful basis for more detailed studies of the evolution of regulatory systems." (PNAS Early Edition, 22 Mai 2009)

Up until the middle of the 20th century, biochemists spent most of their efforts studying metabolism, i.e. obtaining energy from food. Less importance was given to the – technically inexplicable – question of how proteins were regulated as a response to internal and external signals. The biology of regulation only came into its own as an independent research field when technical progress opened the window to scientific analysis of DNA, the carrier of genetic traits, and to the synthesis of proteins, the most important functional elements of the cell. It quickly became clear that complex and diverse regulation mechanisms adapted the genetic activity of cells to internal and external conditions – even in microorganisms.

It is known, for example, that the intestinal bacterium Escherichia coli in the digestive tract of young mammals can break down lactose, the sugar abundant in mother's milk. To do this, the bacterium produces the enzyme lactase – but only if lactose is actually present. Most of the time, however, lactose is not present. At these times, the gene that encodes the lactase enzyme is blocked by a repressor. Only one key fits the lock to this protein, to detach the repressor from the lactase gene: a lactose molecule, as a single, unmistakable sign that this sugar is present and now available as food. Other genes, however, are regulated without the use of repressors: these genes are directly activated by a transcription factor that binds to them.

These are only two simple examples of mechanisms that regulate gene activity, and they are functionally equivalent. "The question was raised long ago as to whether nature's choice in favor of one of the two mechanisms is only random, or whether there are specific criteria," reports Gerland. "Studies have shown that the demand for a gene product is a decisive factor: it is mostly genes whose proteins are required most of the time that are directly activated. Proteins such as lactase, on the other hand, which are only used some of the time, tend to have genetic codes that are only released from their repressor when needed." The "use-it-or-lose-it" principle was proposed to explain this, which demands the frequent use of regulation factors because they would otherwise be subject to damaging effects.

Using computer simulations and theoretical calculations, Gerland and Hwa have now demonstrated that a second – even opposing – principle also comes into play: "wear-and-tear". Its name reflects the fact that constant use of regulators can also lead to detrimental consequences. The two researchers therefore investigated whether other factors that can affect the evolution of microorganisms play a role. "Our results clearly show that both principles are valid, even though they are actually contradictory," Gerland says. "In this conflict between maximal and minimal use of the regulators, other criteria do in fact come into play: the population size and the periods over which the environmental changes stretch."

Genetic regulation in small populations existing in an environment that only slowly changes is governed by the "use-it-or-lose-it" principle, with maximal use of the regulation proteins. In the opposite case, however, it is more "wear-and-tear" that comes into play with minimal use of the proteins. "The evolution of regulatory systems is still barely understood," reports Gerland. "So far, appropriate theoretical methods have also been largely lacking. But the time-dependent selection shown in our example may now prove to be an important factor in regulatory development. Many questions are still open, and our results will hopefully prompt further investigations."

Publication:
"Evolutionary selection between alternative modes of gene regulation",
Ulrich Gerland and Terence Hwa,
PNAS Early Edition, 22 May 2009
Contact:
Professor Ulrich Gerland
Tel.: 089 / 2180 – 4514
Fax: 089 / 2180 - 13545
E-mail: gerland@lmu.de

Luise Dirscherl | EurekAlert!
Further information:
http://www.lmu.de
http://www.physik.uni-muenchen.de/~gerland

More articles from Life Sciences:

nachricht Separating methane and CO2 will become more efficient
18.10.2017 | KU Leuven

nachricht Bolstering fat cells offers potential new leukemia treatment
17.10.2017 | McMaster University

All articles from Life Sciences >>>

The most recent press releases about innovation >>>

Die letzten 5 Focus-News des innovations-reports im Überblick:

Im Focus: Neutron star merger directly observed for the first time

University of Maryland researchers contribute to historic detection of gravitational waves and light created by event

On August 17, 2017, at 12:41:04 UTC, scientists made the first direct observation of a merger between two neutron stars--the dense, collapsed cores that remain...

Im Focus: Breaking: the first light from two neutron stars merging

Seven new papers describe the first-ever detection of light from a gravitational wave source. The event, caused by two neutron stars colliding and merging together, was dubbed GW170817 because it sent ripples through space-time that reached Earth on 2017 August 17. Around the world, hundreds of excited astronomers mobilized quickly and were able to observe the event using numerous telescopes, providing a wealth of new data.

Previous detections of gravitational waves have all involved the merger of two black holes, a feat that won the 2017 Nobel Prize in Physics earlier this month....

Im Focus: Smart sensors for efficient processes

Material defects in end products can quickly result in failures in many areas of industry, and have a massive impact on the safe use of their products. This is why, in the field of quality assurance, intelligent, nondestructive sensor systems play a key role. They allow testing components and parts in a rapid and cost-efficient manner without destroying the actual product or changing its surface. Experts from the Fraunhofer IZFP in Saarbrücken will be presenting two exhibits at the Blechexpo in Stuttgart from 7–10 November 2017 that allow fast, reliable, and automated characterization of materials and detection of defects (Hall 5, Booth 5306).

When quality testing uses time-consuming destructive test methods, it can result in enormous costs due to damaging or destroying the products. And given that...

Im Focus: Cold molecules on collision course

Using a new cooling technique MPQ scientists succeed at observing collisions in a dense beam of cold and slow dipolar molecules.

How do chemical reactions proceed at extremely low temperatures? The answer requires the investigation of molecular samples that are cold, dense, and slow at...

Im Focus: Shrinking the proton again!

Scientists from the Max Planck Institute of Quantum Optics, using high precision laser spectroscopy of atomic hydrogen, confirm the surprisingly small value of the proton radius determined from muonic hydrogen.

It was one of the breakthroughs of the year 2010: Laser spectroscopy of muonic hydrogen resulted in a value for the proton charge radius that was significantly...

All Focus news of the innovation-report >>>

Anzeige

Anzeige

Event News

ASEAN Member States discuss the future role of renewable energy

17.10.2017 | Event News

World Health Summit 2017: International experts set the course for the future of Global Health

10.10.2017 | Event News

Climate Engineering Conference 2017 Opens in Berlin

10.10.2017 | Event News

 
Latest News

Researchers release the brakes on the immune system

18.10.2017 | Health and Medicine

Separating methane and CO2 will become more efficient

18.10.2017 | Life Sciences

Ocean atmosphere rife with microbes

17.10.2017 | Life Sciences

VideoLinks
B2B-VideoLinks
More VideoLinks >>>