Microbes feeding on methane release arsenic into groundwater

Um Sedimente für Laborexperimente mit Methan zu gewinnen, wurden 2018 in Van Phuc, Vietnam, Rotationsbohrungen durchgeführt.
Foto: Andreas Kappler

Tübingen University researchers uncover mechanism by which bacteria dissolve arsenic-bearing minerals – leading to groundwater contamination in Vietnam

Arsenic is a toxin now widely present in rivers and groundwater in countries such as Bangladesh and Vietnam. It is released by the activity of microorganisms. Yet for a long time it was unclear what the microorganisms ate to release the arsenic. A team of geomicrobiologists led by Professor Andreas Kappler from the University of Tübingen has shown that the microbes break down arsenic-bearing sediments using organic compounds from deep layers as food, disproving theories that the fuel for their activity was drawn from plants or algae on the surface.

Now the team has also shown that along with the organic materials in the sediments, methane gas is an important source of food for the bacteria and also plays a key role in their release of arsenic. This new mechanism responsible for arsenic mobilization can explain elevated concentration of arsenic in many aquifers and will help to more precisely predict future drinking water contamination. The study has been published in the journal Nature Communications Earth & Environment.

Arsenic-containing iron minerals originally from the Himalaya can nowadays be found in the subsurface sediments of many river deltas in southeast Asia. These aquifer sediments host diverse assemblages of microorganisms which were thought to be responsible for the dissolution of the iron minerals and the release of arsenic. “After our previous study, we assumed that they run their metabolism and growth off organic material in the sediments,” says doctoral researcher Martyna Glodowska, lead author of the current study.

High concentration of natural gas

The Tübingen scientists, working with international colleagues, investigated an arsenic-contaminated groundwater system in VanPhuc, a village 15 kilometers south-east of Hanoi in Vietnam. “There we observed large concentrations of the greenhouse gas methane – in some cases at such high concentrations that the methane even bubbled out from water brought to the surface,” says Andreas Kappler. Methane is the main component of the natural gas used as an energy source in households and in industry. “That gave us the idea that it could also be used as energy source by the arsenic-mobilizing microorganisms,” says Glodowska.

Experiments carried out in the laboratory in Tübingen – in which methane was added to sediment samples from Vietnam – enabled the researchers to prove that theory. “In doing this, we discovered a new mechanism leading to arsenic mobilization,” says Kappler. “Methane produced by other microorganisms in the subsurface seems to drive arsenic mobilization by methane-eating and mineral-dissolving bacteria,” he adds.

A comparative analysis of other aquifers worldwide revealed that many of them contain large amounts of methane and a high abundance of bacteria which either produce or use it. “Therefore the mobilization of arsenic by methane-oxidizing microorganisms could be an important mechanism in the contamination of groundwater with arsenic in many places around the world,” Kappler says. “We now need to understand how abundant these bacteria are in arsenic-iron-mineral bearing groundwater systems,” Professor Kappler says. Martyna Glodowska adds: “It is a crucial step that we have identified both methane as a food source and the microorganisms mediating the process of arsenic release into groundwater.”

Wissenschaftliche Ansprechpartner:

Professor Dr. Andreas Kappler
University of Tübingen
Faculty of Science
Center for Applied Geoscience
Phone +49 7071 29-74992


Glodowska, M., Stopelli, E., Schneider, M., Rathi, B., Straub, D., Lightfoot, A., Kipfer, R., Berg, M., Advects, Jetten, M., Kleindienst, S., Kappler, A. (2020) Arsenic mobilization in groundwater driven by microbial iron-dependent anaerobic oxidation of methane. Nature Communications Earth & Environment, https://doi.org.10.1038/s43247-020-00037-y.


Media Contact

Dr. Karl Guido Rijkhoek Hochschulkommunikation
Eberhard Karls Universität Tübingen

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Earth Sciences (also referred to as Geosciences), which deals with basic issues surrounding our planet, plays a vital role in the area of energy and raw materials supply.

Earth Sciences comprises subjects such as geology, geography, geological informatics, paleontology, mineralogy, petrography, crystallography, geophysics, geodesy, glaciology, cartography, photogrammetry, meteorology and seismology, early-warning systems, earthquake research and polar research.

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