Forum for Science, Industry and Business

Sponsored by:     3M 
Search our Site:

 

Hidden Soil Fungus, Now Revealed, Is in a Class All Its Own

15.08.2011
A type of fungus that's been lurking underground for millions of years, previously known to science only through its DNA, has been cultured, photographed, named and assigned a place on the tree of life.

Researchers say it represents an entirely new class of fungi: the Archaeorhizomycetes. Like the discovery of a weird type of aquatic fungus that made headlines a few months ago, this finding offers a glimpse at the rich diversity of microorganisms that share our world but remain hidden from view.

The fungal phenomenon, brought to light by researchers at the University of Michigan, the Swedish University of Agricultural Sciences, the Imperial College London and Royal Botanic Gardens and the University of Aberdeen, is described in the Aug. 12 issue of the journal Science.

Although unseen until recently, the fungus was known to be extremely common in soil. Its presence was detected in studies of environmental DNA---genetic material from a living organism that is detected in bulk environmental samples, such as samples of the soil or water in which the organism lives.

"You couldn't really sample the soil without finding evidence of it," said Timothy James, a U-M assistant professor of ecology and evolutionary biology and an assistant curator at the university's herbarium. "So people really wanted to know what it looks like."

That became possible thanks to the work of the Swedish researchers, led by mycologist Anna Rosling. The researchers were studying mycorrhizae---fungi that colonize plant roots---when they discovered that some root tips harbored not only the mycorrhizae they were interested in, but also an unfamiliar fungus.

"When culturing mycorrhizal fungi from coniferous roots we were exited to find that one of the cultures represented this unfamiliar fungus," said Anna Rosling.

Later the culture was identified as a member of Soil Clone Group 1 (SCG1), a ubiquitous but enigmatic lineage known only from environmental DNA. It's not especially impressive to look at, James concedes: "It doesn't make some crazy structure that nobody's ever seen." But simply seeing and photographing a form of life that's been invisible until now is cause for excitement.

Having in hand a member of the elusive fungal group, the Swedish scientists and their collaborators have been able to study the group in more detail than ever before possible, using electron microscopy, DNA sequencing and in vitro growth studies to characterize it. The fungus they cultured is a slow-growing form that produces none of the typical aerial or aquatically dispersed spores most fungi typically reproduce with, suggesting it seldom if ever sees the light of day.

"By finding that it is slow growing and only produces spores in the soil, we can provide an explanation for why it has taken so long to be cultured," James said. The researchers also performed experiments aimed at understanding how the fungus, dubbed Archaeorhizomyces finlayi, interacts with the environment and with other organisms.

"We don't have any evidence that it's pathogenic; we don't have any evidence that it's mutualistic and doing anything beneficial for the plant," James said. "It's a little bit of a boring fungus." It may, however, help break down and recycle dead plants, a common---and extremely important---job for fungi. Hints of this role come from the observation that A. finlayi grows in the lab if provided with food in the form of glucose or cellulose (the main structural component of plant cell walls).

"Because it is so common in the soil, it must be very successful at what it does, and that role must be ecologically relevant," Rosling said.

Now that the researchers have ruled out some typical fungal roles---such as pathogen, benign endophyte, and member of a mycorrhizal association---they hope to find out through additional experiments exactly what role the fungus does play in nature and how it interacts with plants and other fungi.

"At this point we're still in the early stages of understanding what it's doing out there," James said.

Whether A. finlayi turns out to be beneficial or detrimental to the plants or microbes it interacts with, it's sure to contribute to understanding the diverse array of fungi in the world.

Though environmental DNA of SCG1 had been collected and reported in more than 50 previous studies, the type of DNA collected in the past didn't lend itself to analyses that would definitively pinpoint the group's position on the tree of life.

"Now that we have the culture, we can sequence almost any gene we want, so that's what we've done," James said.

The resulting information, combined with DNA data from the previous studies, revealed that A. finlayi belongs in an eclectic subphylum known as Taphrinomycotina, other members of which include the yeast Schizosaccharomyces, often used in studies of cell biology and evolution, and Pneumocystis, which can cause pneumonia in people with weakened immune systems, such as those who have cancer or HIV/AIDS or are undergoing treatment with immune-suppressing drugs.

In addition to James and Rosling, who is currently a visiting research associate at Indiana University, the paper's authors include Filipa Cox of the Imperial College London and Royal Botanic Gardens; Karelyn Cruz-Martinez, Katarina Ihrmark, Björn Lindahl and Audrius Menkis of the Swedish University of Agricultural Sciences; and Gwen-Aëlle Grelet of the University of Aberdeen.

The research was funded by the Carl Trygger Foundation, The Swedish Research Council Formas and the National Environment Research Council (UK).

Timothy James: www.lsa.umich.edu/eeb/directory/faculty/tyjames

Anna Rosling: www.slu.se/sv/fakulteter/nl/om-fakulteten/institutioner/institutionen-for-skoglig-mykologi-och-patologi/kontakt/personliga-hemsidor/anna-rosling

| University of Michigan
Further information:
http://www.sciencemag.org
http://www.umich.edu

Further reports about: Agricultural Research Agricultural Sciences DNA Science TV Soil fungus immune system

More articles from Life Sciences:

nachricht At last, butterflies get a bigger, better evolutionary tree
16.02.2018 | Florida Museum of Natural History

nachricht New treatment strategies for chronic kidney disease from the animal kingdom
16.02.2018 | Veterinärmedizinische Universität Wien

All articles from Life Sciences >>>

The most recent press releases about innovation >>>

Die letzten 5 Focus-News des innovations-reports im Überblick:

Im Focus: Demonstration of a single molecule piezoelectric effect

Breakthrough provides a new concept of the design of molecular motors, sensors and electricity generators at nanoscale

Researchers from the Institute of Organic Chemistry and Biochemistry of the CAS (IOCB Prague), Institute of Physics of the CAS (IP CAS) and Palacký University...

Im Focus: Hybrid optics bring color imaging using ultrathin metalenses into focus

For photographers and scientists, lenses are lifesavers. They reflect and refract light, making possible the imaging systems that drive discovery through the microscope and preserve history through cameras.

But today's glass-based lenses are bulky and resist miniaturization. Next-generation technologies, such as ultrathin cameras or tiny microscopes, require...

Im Focus: Stem cell divisions in the adult brain seen for the first time

Scientists from the University of Zurich have succeeded for the first time in tracking individual stem cells and their neuronal progeny over months within the intact adult brain. This study sheds light on how new neurons are produced throughout life.

The generation of new nerve cells was once thought to taper off at the end of embryonic development. However, recent research has shown that the adult brain...

Im Focus: Interference as a new method for cooling quantum devices

Theoretical physicists propose to use negative interference to control heat flow in quantum devices. Study published in Physical Review Letters

Quantum computer parts are sensitive and need to be cooled to very low temperatures. Their tiny size makes them particularly susceptible to a temperature...

Im Focus: Autonomous 3D scanner supports individual manufacturing processes

Let’s say the armrest is broken in your vintage car. As things stand, you would need a lot of luck and persistence to find the right spare part. But in the world of Industrie 4.0 and production with batch sizes of one, you can simply scan the armrest and print it out. This is made possible by the first ever 3D scanner capable of working autonomously and in real time. The autonomous scanning system will be on display at the Hannover Messe Preview on February 6 and at the Hannover Messe proper from April 23 to 27, 2018 (Hall 6, Booth A30).

Part of the charm of vintage cars is that they stopped making them long ago, so it is special when you do see one out on the roads. If something breaks or...

All Focus news of the innovation-report >>>

Anzeige

Anzeige

VideoLinks
Industry & Economy
Event News

2nd International Conference on High Temperature Shape Memory Alloys (HTSMAs)

15.02.2018 | Event News

Aachen DC Grid Summit 2018

13.02.2018 | Event News

How Global Climate Policy Can Learn from the Energy Transition

12.02.2018 | Event News

 
Latest News

Fingerprints of quantum entanglement

16.02.2018 | Information Technology

'Living bandages': NUST MISIS scientists develop biocompatible anti-burn nanofibers

16.02.2018 | Health and Medicine

Hubble sees Neptune's mysterious shrinking storm

16.02.2018 | Physics and Astronomy

VideoLinks
Science & Research
Overview of more VideoLinks >>>