Forum for Science, Industry and Business

Sponsored by:     3M 
Search our Site:

 

NMR to elucidate protein-DNA interaction

16.07.2004


Determining exactly how proteins connect with specific DNA sequences in human cells has eluded researchers and scientists for years. While it has been possible to record the speed at which a protein could bond with DNA, little was known about how proteins located and connected with a specific pattern of DNA to allow genes to express themselves in the form of traits such as facial appearance, hair and eye color or behaviors.

In the July 16 issue of the journal Science, Rutgers-Newark chemistry professor Babis Kalodimos offers a solution to this puzzle in his paper, "Structure and Flexibility Adaptation in Nonspecific and Specific Protein-DNA Complexes." Kalodimos’ findings may be the clue researchers need to develop future methods to inhibit the expression of certain genes that may pre-dispose individuals to harmful diseases such as cancer and Alzheimer’s disease.

Through the use of the nuclear magnetic resonance (NMR) spectroscopy, Kalodimos and his co-workers were able to determine how proteins slide along the lengthy strands forming the helix structure of DNA until they reach their intended destination – a specific DNA sequence. More important, they illustrated in detail how proteins single out their partner DNA out of millions of non-functional ones.



To better understand the scope of the question facing researchers, consider that billions of DNA codes exist within an individual’s genetic make-up and the protein must work its way through millions of non-specific DNA sequences in order to locate the correct connection.

DNA (Deoxyribonucleic acid) is a chemical structure that forms chromosomes. Structurally, DNA is a double helix made up of two strands of genetic material spiraled around each other. Each strand contains a sequence of bases (also called nucleotides). A base is one of four chemicals (adenine, guanine, cytosine and thymine). The two strands of DNA are connected at each base, but each base will only bond with one other specific base. For example, Adenine (A) will only bond with thymine (T), and guanine (G) will only bond with cytosine (C).

"We know that any protein binds first with any irrelevant DNA sequence, but the interaction is weak. It searches for the correct sequence by sliding along the DNA until it can bind with a specific DNA sequence and form a complex," Kalodimos explained. "This helps us begin to complete the story of how proteins and DNA find each other in a very fast and accurate way. It provides us with a classical model for understanding protein-DNA interaction and offers valuable information about how transcription can be modulated at the gene level."

Peter Haigney | EurekAlert!
Further information:
http://www.rutgers.edu

More articles from Life Sciences:

nachricht Switch-in-a-cell electrifies life
18.12.2018 | Rice University

nachricht Plant biologists identify mechanism behind transition from insect to wind pollination
18.12.2018 | University of Toronto

All articles from Life Sciences >>>

The most recent press releases about innovation >>>

Die letzten 5 Focus-News des innovations-reports im Überblick:

Im Focus: Data storage using individual molecules

Researchers from the University of Basel have reported a new method that allows the physical state of just a few atoms or molecules within a network to be controlled. It is based on the spontaneous self-organization of molecules into extensive networks with pores about one nanometer in size. In the journal ‘small’, the physicists reported on their investigations, which could be of particular importance for the development of new storage devices.

Around the world, researchers are attempting to shrink data storage devices to achieve as large a storage capacity in as small a space as possible. In almost...

Im Focus: Data use draining your battery? Tiny device to speed up memory while also saving power

The more objects we make "smart," from watches to entire buildings, the greater the need for these devices to store and retrieve massive amounts of data quickly without consuming too much power.

Millions of new memory cells could be part of a computer chip and provide that speed and energy savings, thanks to the discovery of a previously unobserved...

Im Focus: An energy-efficient way to stay warm: Sew high-tech heating patches to your clothes

Personal patches could reduce energy waste in buildings, Rutgers-led study says

What if, instead of turning up the thermostat, you could warm up with high-tech, flexible patches sewn into your clothes - while significantly reducing your...

Im Focus: Lethal combination: Drug cocktail turns off the juice to cancer cells

A widely used diabetes medication combined with an antihypertensive drug specifically inhibits tumor growth – this was discovered by researchers from the University of Basel’s Biozentrum two years ago. In a follow-up study, recently published in “Cell Reports”, the scientists report that this drug cocktail induces cancer cell death by switching off their energy supply.

The widely used anti-diabetes drug metformin not only reduces blood sugar but also has an anti-cancer effect. However, the metformin dose commonly used in the...

Im Focus: New Foldable Drone Flies through Narrow Holes in Rescue Missions

A research team from the University of Zurich has developed a new drone that can retract its propeller arms in flight and make itself small to fit through narrow gaps and holes. This is particularly useful when searching for victims of natural disasters.

Inspecting a damaged building after an earthquake or during a fire is exactly the kind of job that human rescuers would like drones to do for them. A flying...

All Focus news of the innovation-report >>>

Anzeige

Anzeige

VideoLinks
Industry & Economy
Event News

ICTM Conference 2019: Digitization emerges as an engineering trend for turbomachinery construction

12.12.2018 | Event News

New Plastics Economy Investor Forum - Meeting Point for Innovations

10.12.2018 | Event News

EGU 2019 meeting: Media registration now open

06.12.2018 | Event News

 
Latest News

Pressure tuned magnetism paves the way for novel electronic devices

18.12.2018 | Materials Sciences

New type of low-energy nanolaser that shines in all directions

18.12.2018 | Physics and Astronomy

NASA research reveals Saturn is losing its rings at 'worst-case-scenario' rate

18.12.2018 | Physics and Astronomy

VideoLinks
Science & Research
Overview of more VideoLinks >>>