Now, for the first time, scientists have quantified the data capacity of a biochemical signaling pathway and found a surprise – it’s way lower than even an old-fashioned, dial-up modem.
Can you hear me now? When you feel symptoms of a nasty bug, you phone the doctor. Cells in your body are also receiving “calls,” through a biochemical signaling pathway that turns out to have surprisingly low data capacity. Image: iStockphoto.com
“This key biochemical pathway is involved in complex functions but can transmit less than one bit – the smallest unit of information in computing,” says Ilya Nemenman, an associate professor of physics and biology at Emory University. “It’s a simple result, but it changes our view of how cells access chemical data.”
The journal Science is publishing the discovery by Nemenman and colleagues from Johns Hopkins University, including Andre Levchenko, Raymond Cheong, Alex Rhee and Chiaochun Joanne Wang.
During the 1980s, cell biologists began identifying key signaling pathways such as nuclear factor kappa B (NF-kB), known to control the expression of genes in response to everything from invading pathogens to cancer. But the amount of information carried by chemical messengers along these pathways has remained a mystery.
“Without quantifying the signal, using math and computer analysis to attach a number to how much information is getting transmitted, you have a drastically incomplete picture of what’s going on,” says Nemenman, a theoretical biophysicist.
He and Levchenko, a biomedical engineer, began discussing the problem back in 2007 after they met at a conference.
Levchenko developed microfluidic and measurement techniques to conduct experiments on bio-chemical signaling of the NF-kB pathway, and measure the transmissions occurring on the pathway in many thousands of cells at one time. Nemenman formulated the theoretical framework to analyze and quantify the results of the experiments.
“It was a shock to learn that the amount of information getting sent through this pathway is less than one bit, or binary digit,” Nemenman says. “That’s only enough information to make one binary decision, a simple yes or no.”
And yet NF-kB is regulating all kinds of complex decisions made by cells, in response to stimuli ranging from stress, free radicals, bacterial and viral pathogens and more. “Our result showed that it would be impossible for cells to make these decisions based just on that pathway because they are not getting enough information,” Nemenman says. “It would be like trying to send a movie that requires one megabit per second through an old-style modem that only transmits 28 kilobits per second.”
They analyzed the signals of several other biochemical pathways besides NF-kB and got a similar result, suggesting that a data capacity of less than one bit could be common. So if cells are not getting all the information through signaling pathways, where is it coming from?
“We’re proposing that cells somehow talk with each other outside of these known pathways,” Nemenman says. “A single cell doesn’t have enough information to consider all the variables and decide whether to repair some tissue. But when groups of cells talk to each other, and each one adds just a bit of knowledge, they can make a collective decision about what actions to take.”
He compares it to a bunch of people at a cocktail party, with cell phones that have weak signals pressed to their ears. Each person is receiving simple messages via their phones that provide a tiny piece to a puzzle that needs to be solved. When the people chatter together and share their individual messages, they are able to collectively arrive at a reliable solution to the puzzle.
A similar phenomenon, called population coding, had been identified for the electrical activity of neural networks, but Nemenman and his colleagues are now applying the idea to bio-chemical pathways.
They hope to build on this research by zeroing in on the role of cell signaling in specific diseases.
In particular, Nemenman wants to analyze and compare the signaling capacities of a cancerous cell versus a normal cell.
“Cancerous cells divide when they shouldn’t, which means they are making bad decisions,” he says. “I would like to quantify that decision-making process and determine if cancer cells have reduced information transduction capacities, or if they have the same capacities as healthy cells and are simply making wrong decisions.”
Nemenman uses a malfunctioning computer as an example. “If you push the ‘a’ key on your computer and a ‘d’ always shows up, that means the computer is misprogrammed but the information from your keystroke gets through just fine,” he says. “But if you keep pressing the letter ‘a’ and different, random letters show up, that indicates a problem with the way the information is being transmitted.”
Beverly Clark | EurekAlert!
Historical rainfall levels are significant in carbon emissions from soil
30.05.2017 | University of Texas at Austin
3D printer inks from the woods
30.05.2017 | Empa - Eidgenössische Materialprüfungs- und Forschungsanstalt
The world's highest gain high power laser amplifier - by many orders of magnitude - has been developed in research led at the University of Strathclyde.
The researchers demonstrated the feasibility of using plasma to amplify short laser pulses of picojoule-level energy up to 100 millijoules, which is a 'gain'...
Staphylococcus aureus is a feared pathogen (MRSA, multi-resistant S. aureus) due to frequent resistances against many antibiotics, especially in hospital infections. Researchers at the Paul-Ehrlich-Institut have identified immunological processes that prevent a successful immune response directed against the pathogenic agent. The delivery of bacterial proteins with RNA adjuvant or messenger RNA (mRNA) into immune cells allows the re-direction of the immune response towards an active defense against S. aureus. This could be of significant importance for the development of an effective vaccine. PLOS Pathogens has published these research results online on 25 May 2017.
Staphylococcus aureus (S. aureus) is a bacterium that colonizes by far more than half of the skin and the mucosa of adults, usually without causing infections....
Physicists from the University of Würzburg are capable of generating identical looking single light particles at the push of a button. Two new studies now demonstrate the potential this method holds.
The quantum computer has fuelled the imagination of scientists for decades: It is based on fundamentally different phenomena than a conventional computer....
An international team of physicists has monitored the scattering behaviour of electrons in a non-conducting material in real-time. Their insights could be beneficial for radiotherapy.
We can refer to electrons in non-conducting materials as ‘sluggish’. Typically, they remain fixed in a location, deep inside an atomic composite. It is hence...
Two-dimensional magnetic structures are regarded as a promising material for new types of data storage, since the magnetic properties of individual molecular building blocks can be investigated and modified. For the first time, researchers have now produced a wafer-thin ferrimagnet, in which molecules with different magnetic centers arrange themselves on a gold surface to form a checkerboard pattern. Scientists at the Swiss Nanoscience Institute at the University of Basel and the Paul Scherrer Institute published their findings in the journal Nature Communications.
Ferrimagnets are composed of two centers which are magnetized at different strengths and point in opposing directions. Two-dimensional, quasi-flat ferrimagnets...
24.05.2017 | Event News
23.05.2017 | Event News
22.05.2017 | Event News
30.05.2017 | Life Sciences
30.05.2017 | Power and Electrical Engineering
29.05.2017 | Earth Sciences