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Plant cells survive but stop dividing upon DNA damage

09.10.2017

NAIST researchers show the molecular pathway through which plants cease cell division upon DNA damage

The cell cycle is the system through which a cell grows and divides. It is also how a cell passes its DNA to its progeny and is why the cell cycle ceases if the DNA is damaged, as otherwise it risks passing this damage to daughter cells.


Green spots indicate a transcription factor that accumulates and inhibits cell division upon DNA damage. Researchers found an indispensable role of the transcription factor in arresting plant growth under stressful conditions.

Credit: Masaaki Umeda

Scientists at the Nara Institute of Science and Technology (NAIST) have reported a new molecular mechanism that explains how this cessation occurs. The study, which can be read in Nature Communications, shows the transcription factor family MYB3R prevents progression to the division stage (M phase) of the cell cycle in Arabidopsis, a small flowering plant that is a member of the mustard family.

"Inhibition of cell division in response to DNA damage enables cells to maintain genome integrity. The inhibition is regulated by different molecules in animals and plants," explains NAIST Professor Masaaki Umeda, who studies the role of stem cells in plant growth.

MYB3R can be divided into groups of transcription activators (Act-MYB) and transcription repressors (Rep-MYB). Plants grow through their root tip and shoot apex, but not upon DNA damage. In the study, Prof. Umeda and his colleagues found termination of the growth was accompanied by an accumulation of Rep-MYB proteins in these regions and that absent this accumulation, the plants would show signs of growing leaves and flowers.

To understand how this accumulation occurs in response to DNA damage, the scientists considered the role of CDK, or cyclin-dependent kinases. CDKs are crucial for the regulation of the cell cycle. DNA damage suppresses CDK activity, which prevents progression to M phase.

Prof. Umeda found that inhibiting CDKs even with the absence of DNA damage would cause the Rep-MYB3R accumulation seen with DNA damage and stall the cell cycle before the M phase transition. "We found that CDK activity is required for Rep-MYB degradation under normal conditions. The degradation is suppressed due to DNA damage," he said.

The study further found that the accumulated Rep-MYB proteins target genes responsible for transitioning the cell to M phase. "Rep-MYB has a number of G2/M-specific target genes. We found that they stop plant growth by targeting only a specific set of these genes," notes Prof. Umeda.

Why only a specific set and not all its target genes is unclear, though Prof. Umeda suggests that this finding could be evidence that a cofactor that interacts with Rep-MYB may determine the selectivity. Prof. Umeda says that the study provides a new paradigm for how plant cell division ceases upon DNA damage, thus preventing damaged cells from accumulating under stressful conditions.

"Without DNA damage, CDK prevents Rep-MYB from activating, which allows the cell cycle to progress to cell division. DNA damage inhibits CDK activity, freeing Rep-MYB and stopping the cell division," he says.

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[Resource]

Title: Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage


Authors: Poyu Chen, Hirotomo Takatsuka, Naoki Takahashi, Rie Kurata, Yoichiro Fukao, Kosuke Kobayashi, Masaki Ito & Masaaki Umeda*


Publication: Nature Communications. 8:635, 21 September 2017.


DOI: 10.1038/s41467-017-00676-4


*Author for correspondence

Information about Prof. Umeda lab can be found at this website; http://bsw3.naist.jp/eng/courses/courses105.html

About NAIST

NAIST was founded in 1991 as a Japanese national university consisting solely of graduate schools in three integrated areas: information science, biological sciences, and materials science. In the early 2018, NAIST will transform its current structure into the one graduate school system to further promote the mission of cultivating global leaders in science and technology who will actively respond to social demands. At present, about 1,000 students -22% from overseas- are supervised by roughly 200 NAIST faculty. With its cutting-edge facilities and a 5 to 1 student-to-faculty ratio, NAIST's world-leading research and education are a direct result of its rich, global environment and supportive infrastructure. NAIST has quickly established itself as a world-class research and education center where young scientists and technologists become tomorrow's global leaders. For more detail please visit: http://www.naist.jp/en/

Michiko Muraki | EurekAlert!

Further reports about: DNA DNA damage NAIST Nature Communications cell cycle cell division genes proteins

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