Technique to Probe Hidden Dynamics of Molecular Biology

“Despite the enormous amount of study directed at diabetes, there’s really very little understanding of the collective mechanisms that govern or regulate insulin secretion,” said project director Aaron Dinner, Associate Professor in Chemistry.

A second goal: to control cell behavior and function more generally, which may ultimately culminate in other applications, including the bioremediation of environmental problems. Collaborating with Dinner on the project are Louis Philipson, PhD’82, MD ’86, Professor in Medicine and Director of the University of Chicago Kovler Diabetes Center; and chemistry professors Rustem Ismagilov and Norbert Scherer, SB’82.

The four scientists share an interest in the collective behavior of cells that emerges from a complex ensemble of atoms and molecules working in concert at different scales of time and space. “In a living system you have this hierarchy of coupled time and length scales,” Dinner said. “How is it that all of these different dynamics at one time and length scale get coupled to dynamics at another scale?”

The collaborators have worked together previously in various pairs. “It seemed natural to put those different pair-wise interactions together,” Dinner said.

Philipson and Scherer, for example, worked together to pioneer a microscopy method for imaging activity inside beta cells that led up to insulin secretion under different conditions. Ismagilov and Philipson collaborated on a means of efficiently measuring and analyzing beta-cell secretions. And Dinner and Scherer have analyzed the dynamics of an oddly behaving RNA molecule.

Non-intuitive molecular behavior

Dinner and Scherer’s study revealed some non-intuitive, hidden dynamics. They experimented with the molecule in solution, expecting it to move slowly, somewhat like a person walking around in a swimming pool. But after changing the chemical solution they found that the molecule behaved in a non-intuitive way.

“It was as though something was driving it,” Dinner said.

The chemical pulses they had introduced into the molecule’s watery environment were the driving force of the dynamic oscillations they observed. In their next step, they applied the process to a bacterium, coupling cycles inside the cell that would ordinarily operate on different time scales. The scientists then analyzed the bacterium’s response to the chemical pulses for insights into its internal properties.

The similar use of optical, magnetic and spectroscopic techniques is a standard means of probing molecular dynamics. Based on their RNA research, Scherer and Dinner realized that a chemical version of the technique might provide a whole new way of studying cellular dynamics. They call their new technique “chemical perturbation spectroscopy.”

“We measure everything at a single-cell level so we can quantify in detail what each single cell is doing as it evolves through multiple generations,” Scherer said. “These studies are allowing us to lay the groundwork for how to measure perturbations that we apply to cells, and how to do the analysis. Essentially, none of this has been done before, so we have to invent the approach.”

Once the details are worked out, Scherer said, “We expect to be able to target certain cell functions and, let’s say, increase insulin output from the beta cells.”

Media Contact

Steve Koppes Newswise Science News

More Information:

http://www.uchicago.edu

All latest news from the category: Life Sciences and Chemistry

Articles and reports from the Life Sciences and chemistry area deal with applied and basic research into modern biology, chemistry and human medicine.

Valuable information can be found on a range of life sciences fields including bacteriology, biochemistry, bionics, bioinformatics, biophysics, biotechnology, genetics, geobotany, human biology, marine biology, microbiology, molecular biology, cellular biology, zoology, bioinorganic chemistry, microchemistry and environmental chemistry.

Back to home

Comments (0)

Write a comment

Newest articles

Lighting up the future

New multidisciplinary research from the University of St Andrews could lead to more efficient televisions, computer screens and lighting. Researchers at the Organic Semiconductor Centre in the School of Physics and…

Researchers crack sugarcane’s complex genetic code

Sweet success: Scientists created a highly accurate reference genome for one of the most important modern crops and found a rare example of how genes confer disease resistance in plants….

Evolution of the most powerful ocean current on Earth

The Antarctic Circumpolar Current plays an important part in global overturning circulation, the exchange of heat and CO2 between the ocean and atmosphere, and the stability of Antarctica’s ice sheets….

Partners & Sponsors