Forum for Science, Industry and Business

Sponsored by:     3M 
Search our Site:

 

Combining medical knowledge to save lives

10.07.2008
European researchers hope to gain more insight into cardiovascular disease by combining clinical, laboratory and metabolic records with genomic data

Cardiovascular disease (CVD) is the biggest killer among chronic diseases, claiming 17 million lives globally every year. Yet doctors can only attribute 50% of cardiovascular diseases to known risk factors.

Understanding the other risk factors would help doctors target their treatments more accurately, possibly helping to save more lives. A better understanding might also mean individuals could take a more focused effort to reduce their risk of developing a CVD condition.

Many of the risk factors for CVDs, like smoking, gender and low-density lipoprotein (LDL) cholesterol, are well known. But CVD is a complex condition, with very wide variations among the population. By gaining an increased understanding of the risk parameters, doctors would be in a better position to identify those more at risk of CVD.

Enter Multi-Knowledge, an EU-funded project that has developed an IT platform that can combine clinical, laboratory and metabolic information with high throughput genomic data about the same individual.

Other studies have combined genomic data with clinical data, but the Multi-Knowledge team did that exercise on a much larger scale, says Dr. Zohar Yakhini, the project’s technical coordinator.

“People normally collect clinical data that they are interested in, while we have just collected data from a cohort that consists of mostly nominally healthy people,” Yakhini says. “The clinical data that we are working with is much richer than we have seen in the past, that is a novelty of the project.”

By combining information in this way, doctors and researchers will be able to analyse the correlation between the gene expression profile in the blood of an individual and their risk of developing CVD.

“We find pre-clinical conditions to be associated to certain genomic signatures in this population,” he says. “This means that disease processes that start early might already manifest themselves in the genomic data.”

For example, doctors could use the information to identify blood gene expression signatures that link smoking and CVD in some patients, and cholesterol and CVD in others.

If achieved, this level of understanding would provide a powerful tool in preventative medical care. Simple lifestyle changes could reduce an individual patient’s risk of developing a cardiovascular disease to almost zero.

How it works
The Multi-Knowledge system works by combining heterogeneous data into a single computing platform. It sounds simple, but the task was complex.

Gene and protein expression analysis is a very data intensive application. Gene expression occurs when information encoded in DNA gets converted into structures present and operating in a cell. These are the mRNA molecules.

Expression profiling of those molecules, using microarrays, produces very large quantities of information that can be difficult for non-specialists to analyse.

The Multi-Knowledge team developed a data collection system and the protocols to combine the data with additional information collected in a distributed set-up. In this respect the project will have an important influence on emerging standards for heterogeneous medical data collection.

The data, which can come from many sources and take many forms, is stored in a data repository that houses both raw information as well as analysis results. All participants in the study can access data and use the analysis tools that are part of the system. The data analysis tools allow users to connect the repository with external databases and annotations.

After all this work in the background, the information is presented to users via a portal. The platform is an elegant approach to combining various forms of medical data, but its relevance to the clinic depends on its usefulness.

Testing times
So the Multi-Knowledge team tested the new platform by using it to study CVD risk factors in a nominally healthy sample. One such well-known risk is smoking. The Multi-Knowledge team therefore tested this well-known risk factor in 50 apparently healthy young adults. They were looking for an over-expression of genes that provoked an inflammatory response.

The system passed with flying colours. There was a clear over expression of genes that provoke an inflammatory response in those patients who smoked. The team also identified distinct inflammatory expression genetic signatures for smoking and for other risk factors, such as high LDL cholesterol.

The project, which received funding from the EU's Sixth Framework Programme for research, finishes at the end of June 2008. Team members currently continue to work on various elements of the system.

“Not all elements of the system are integrated together, so we are working on that,” says Yakhini. “Other elements of the system have already been deployed in several sites, like the data analysis tool.”

Ultimately the developments will influence the various new approaches to medical information taken by the consortium partners.

“From a commercial perspective, we are not necessarily going to develop a full commercial system,” says Yakhini. “It will likely be the case that respective partners will take pieces of this work and incorporate it into other products that they already have. From an industry standpoint this is also a favourable result.

“But I think many of the consortium partners will continue to work together after the lifetime of the project, finding more pieces in the puzzle that will ultimately yield effective diagnoses tools combining clinical and genomic analysis.”

And then the final impact will be lives saved through better prevention of cardiovascular disease.

Cardiovascular disease is the number one cause of death globally. An estimated 17.5 million people died from cardiovascular disease in 2005, representing 30% of all deaths, according to the World Health Organisation (WHO). Of these deaths, 7.6 million were due to heart attacks and 5.7 million were due to stroke.

By comparison diabetes is responsible for the deaths of one million people.

Cardiovascular disease is caused by disorders of the heart and blood vessels, and includes coronary heart disease (heart attacks), cerebrovascular disease (stroke), raised blood pressure (hypertension), peripheral artery disease, rheumatic heart disease, congenital heart disease and heart failure.

The major causes of cardiovascular disease are tobacco use, physical inactivity, and an unhealthy diet, WHO says.

Note for the media: This feature can be republished without charge provided ICT Results is acknowledged as the source at the top or the bottom of the story. You must request permission before you use any of the photographs on the site. If you do republish, we would be grateful if you could let us know so as to help us provide you with a better service. If you want further information on any of the projects cited in this story please contact us at ictresults@esn.eu.

Christian Nielsen | alfa
Further information:
http://www.esn.eu
http://cordis.europa.eu/ictresults/index.cfm/section/news/tpl/article/BrowsingType/Features/ID/89850

Further reports about: CVD Cardiovascular Medical Multi-Knowledge Yakhini combining

More articles from Life Sciences:

nachricht A novel synthetic antibody enables conditional “protein knockdown” in vertebrates
20.08.2018 | Technische Universität Dresden

nachricht Climate Impact Research in Hannover: Small Plants against Large Waves
17.08.2018 | Leibniz Universität Hannover

All articles from Life Sciences >>>

The most recent press releases about innovation >>>

Die letzten 5 Focus-News des innovations-reports im Überblick:

Im Focus: It’s All in the Mix: Jülich Researchers are Developing Fast-Charging Solid-State Batteries

There are currently great hopes for solid-state batteries. They contain no liquid parts that could leak or catch fire. For this reason, they do not require cooling and are considered to be much safer, more reliable, and longer lasting than traditional lithium-ion batteries. Jülich scientists have now introduced a new concept that allows currents up to ten times greater during charging and discharging than previously described in the literature. The improvement was achieved by a “clever” choice of materials with a focus on consistently good compatibility. All components were made from phosphate compounds, which are well matched both chemically and mechanically.

The low current is considered one of the biggest hurdles in the development of solid-state batteries. It is the reason why the batteries take a relatively long...

Im Focus: Color effects from transparent 3D-printed nanostructures

New design tool automatically creates nanostructure 3D-print templates for user-given colors
Scientists present work at prestigious SIGGRAPH conference

Most of the objects we see are colored by pigments, but using pigments has disadvantages: such colors can fade, industrial pigments are often toxic, and...

Im Focus: Unraveling the nature of 'whistlers' from space in the lab

A new study sheds light on how ultralow frequency radio waves and plasmas interact

Scientists at the University of California, Los Angeles present new research on a curious cosmic phenomenon known as "whistlers" -- very low frequency packets...

Im Focus: New interactive machine learning tool makes car designs more aerodynamic

Scientists develop first tool to use machine learning methods to compute flow around interactively designable 3D objects. Tool will be presented at this year’s prestigious SIGGRAPH conference.

When engineers or designers want to test the aerodynamic properties of the newly designed shape of a car, airplane, or other object, they would normally model...

Im Focus: Robots as 'pump attendants': TU Graz develops robot-controlled rapid charging system for e-vehicles

Researchers from TU Graz and their industry partners have unveiled a world first: the prototype of a robot-controlled, high-speed combined charging system (CCS) for electric vehicles that enables series charging of cars in various parking positions.

Global demand for electric vehicles is forecast to rise sharply: by 2025, the number of new vehicle registrations is expected to reach 25 million per year....

All Focus news of the innovation-report >>>

Anzeige

Anzeige

VideoLinks
Industry & Economy
Event News

LaserForum 2018 deals with 3D production of components

17.08.2018 | Event News

Within reach of the Universe

08.08.2018 | Event News

A journey through the history of microscopy – new exhibition opens at the MDC

27.07.2018 | Event News

 
Latest News

Quantum bugs, meet your new swatter

20.08.2018 | Information Technology

A novel synthetic antibody enables conditional “protein knockdown” in vertebrates

20.08.2018 | Life Sciences

Metamolds: Molding a mold

20.08.2018 | Information Technology

VideoLinks
Science & Research
Overview of more VideoLinks >>>