ORNL process improves catalytic rate of enzymes by 3,000 percent

In a paper published in The Journal of Physical Chemistry Letters, a team led by Pratul Agarwal of the Department of Energy's Oak Ridge National Laboratory described a process that aims to improve upon nature – and it happens in the blink of an eye.

“When light enters the eye and hits the pigment known as rhodopsin, it causes a complex chemical reaction to occur, including a conformational change,” Agarwal said. “This change is detected by the associated protein and through a rather involved chain of reactions is converted into an electrical signal for the brain.”

With this as a model, Agarwal's team theorized that it should be possible to improve the catalytic efficiency of enzyme reactions by attaching chemical elements on the surface of an enzyme and manipulating them with the use of tuned light.

The researchers introduced a light-activated molecular switch across two regions of the enzyme Candida antarctica lipase B, or CALB – which breaks down fat molecules — identified through modeling performed on DOE's Jaguar supercomputer.

“Using this approach, our preliminary work with CALB suggested that such a technique of introducing a compound that undergoes a light-inducible conformational change onto the surface of the protein could be used to manipulate enzyme reaction,” Agarwal said.

While the researchers obtained final laboratory results at industry partner AthenaES, computational modeling allowed Agarwal to test thousands of combinations of enzyme sites, modification chemistry, different wavelengths of light, different temperatures and photo-activated switches. Simulations performed on Jaguar also allowed researchers to better understand how the enzyme's internal motions control the catalytic activity.

“This modeling was very important as it helped us identify regions of the enzyme that were modified by interactions with chemicals,” said Agarwal, a member of ORNL's Computer Science and Mathematics Division. “Ultimately, the modeling helped us understand how the mechanical energy from the surface can eventually be transferred to the active site where it is used to conduct the chemical reaction.”

Agarwal noted that enzymes are present in every organism and are widely used in industry as catalysts in the production of biofuels and countless other every day products. Researchers believe this finding could have immense potential for improving enzyme efficiency, especially as it relates to biofuels.

Other authors of the paper, titled “Engineering a Hyper-catalytic Enzyme by Photoactivated Conformation Modulation,” are Christopher Schultz and Sheldon Broedel Jr. of AthenaES, Aristotle Kalivretenos of Aurora Analytics and Brahma Ghosh, an independent consultant. The paper is available here: http://dx.doi.org/10.1021/jz201675m

Funding for this work was provided by Technology Maturation Funds from Battelle Memorial Institute.

UT-Battelle manages ORNL for DOE's Office of Science. The Office of Science is the single largest supporter of basic research in the physical sciences in the United States and is working to address some of the most pressing challenges of our time. For more information, please visit http://science.energy.gov/

Media Contact

Ron Walli EurekAlert!

More Information:

http://www.ornl.gov

All latest news from the category: Life Sciences and Chemistry

Articles and reports from the Life Sciences and chemistry area deal with applied and basic research into modern biology, chemistry and human medicine.

Valuable information can be found on a range of life sciences fields including bacteriology, biochemistry, bionics, bioinformatics, biophysics, biotechnology, genetics, geobotany, human biology, marine biology, microbiology, molecular biology, cellular biology, zoology, bioinorganic chemistry, microchemistry and environmental chemistry.

Back to home

Comments (0)

Write a comment

Newest articles

Lighting up the future

New multidisciplinary research from the University of St Andrews could lead to more efficient televisions, computer screens and lighting. Researchers at the Organic Semiconductor Centre in the School of Physics and…

Researchers crack sugarcane’s complex genetic code

Sweet success: Scientists created a highly accurate reference genome for one of the most important modern crops and found a rare example of how genes confer disease resistance in plants….

Evolution of the most powerful ocean current on Earth

The Antarctic Circumpolar Current plays an important part in global overturning circulation, the exchange of heat and CO2 between the ocean and atmosphere, and the stability of Antarctica’s ice sheets….

Partners & Sponsors