Human Y Chromosome Much Older Than Previously Thought

Human sex-determining chromosomes: X chromosome (left) and the much smaller Y chromosome.<br>

UA geneticists have discovered the oldest known genetic branch of the human Y chromosome – the hereditary factor determining male sex.

The new divergent lineage, which was found in an individual who submitted his DNA to Family Tree DNA, a company specializing in DNA analysis to trace family roots, branched from the Y chromosome tree before the first appearance of anatomically modern humans in the fossil record.

The results are published in the American Journal of Human Genetics.

“Our analysis indicates this lineage diverged from previously known Y chromosomes about 338,000 ago, a time when anatomically modern humans had not yet evolved,” said Michael Hammer, an associate professor in the University of Arizona's department of ecology and evolutionary biology and a research scientist at the UA's Arizona Research Labs. “This pushes back the time the last common Y chromosome ancestor lived by almost 70 percent.”

Unlike the other human chromosomes, the majority of the Y chromosome does not exchange genetic material with other chromosomes, which makes it simpler to trace ancestral relationships among contemporary lineages. If two Y chromosomes carry the same mutation, it is because they share a common paternal ancestor at some point in the past. The more mutations that differ between two Y chromosomes the farther back in time the common ancestor lived.

Originally, a DNA sample obtained from an African American living in South Carolina was submitted to the National Geographic Genographic Project. When none of the genetic markers used to assign lineages to known Y chromosome groupings were found, the DNA sample was sent to Family Tree DNA for sequencing. Fernando Mendez, a postdoctoral researcher in Hammer's lab, led the effort to analyze the DNA sequence, which included more than 240,000 base pairs of the Y chromosome.

Hammer said “the most striking feature of this research is that a consumer genetic testing company identified a lineage that didn't fit anywhere on the existing Y chromosome tree, even though the tree had been constructed based on perhaps a half-million individuals or more. Nobody expected to find anything like this.”

About 300,000 years ago, the time the Neanderthals are believed to have split from the ancestral human lineage. It was not until more than 100,000 years later that anatomically modern humans appear in the fossil record. They differ from the more archaic forms by a more lightly built skeleton, a smaller face tucked under a high forehead, the absence of a cranial ridge and smaller chins.

Hammer said the newly discovered Y chromosome variation is extremely rare. Through large database searches, his team eventually was able to find a similar chromosome in the Mbo, a population living in a tiny area of western Cameroon in sub-Saharan Africa.

“This was surprising because previously the most diverged branches of the Y chromosome were found in traditional hunter-gatherer populations such as Pygmies and the click-speaking KhoeSan, who are considered to be the most diverged human populations living today.”

“Instead, the sample matched the Y chromosome DNA of 11 men, who all came from a very small region of western Cameroon,” Hammer said. “And the sequences of those individuals are variable, so it's not like they all descended from the same grandfather.”

Hammer cautions against popular concepts of “mitochondrial Eve” or “Y chromosome Adam” that suggest all of humankind descended from exactly one pair of humans that lived at a certain point in human evolution.

“There has been too much emphasis on this in the past,” he said. “It is a misconception that the genealogy of a single genetic region reflects population divergence. Instead, our results suggest that there are pockets of genetically isolated communities that together preserve a great deal of human diversity.”

Still, Hammer said, “It is likely that other divergent lineages will be found, whether in Africa or among African-Americans in the U.S. and that some of these may further increase the age of the Y chromosome tree.”

He added: “There has been a lot of hype with people trying to trace their Y chromosome to different tribes, but this individual from South Carolina can say he did it.”

The study came about by combined efforts of a private business, Family Tree DNA, the efforts of a citizen scientist, Bonnie Schrack, and the research capabilities at the UA.

LINKS:

Research paper, “An African American Paternal Lineage Adds an Extremely Ancient Root to the Human Y Chromosome Phylogenetic Tree” (Abstract): http://www.cell.com/AJHG/abstract/S0002-9297(13)00073-6

Michael Hammer Lab: http://hammerlab.biosci.arizona.edu/research.html

CONTACTS:
Science contact:
Michael Hammer
Department of Ecology and Evolutionary Biology
The University of Arizona
mfh@email.arizona.edu
Media contact:
Daniel Stolte
University Communications
The University of Arizona
520-626-4402
stolte@email.arizona.edu

Media Contact

Daniel Stolte The University of Arizona

More Information:

http://www.arizona.edu

All latest news from the category: Life Sciences and Chemistry

Articles and reports from the Life Sciences and chemistry area deal with applied and basic research into modern biology, chemistry and human medicine.

Valuable information can be found on a range of life sciences fields including bacteriology, biochemistry, bionics, bioinformatics, biophysics, biotechnology, genetics, geobotany, human biology, marine biology, microbiology, molecular biology, cellular biology, zoology, bioinorganic chemistry, microchemistry and environmental chemistry.

Back to home

Comments (0)

Write a comment

Newest articles

Evolution of the most powerful ocean current on Earth

The Antarctic Circumpolar Current plays an important part in global overturning circulation, the exchange of heat and CO2 between the ocean and atmosphere, and the stability of Antarctica’s ice sheets….

Memory Self-Test via Smartphone

… Can Identify Early Signs of Alzheimer’s disease. Dedicated memory tests on smartphones enable the detection of “mild cognitive impairment”, a condition that may indicate Alzheimer’s disease, with high accuracy….

The Sound of the Perfect Coating

Fraunhofer IWS Transfers Laser-based Sound Analysis of Surfaces into Industrial Practice with “LAwave”. Sound waves can reveal surface properties. Parameters such as surface or coating quality of components can be…

Partners & Sponsors