Forum for Science, Industry and Business

Sponsored by:     3M 
Search our Site:

 

The Interior of a Cell from a Moving Protein’s Point of View

11.08.2014

Heidelberg scientists develop new methods to measure intracellular protein movement

Numerous obstacles posed by cellular structures hinder protein movements within the cell. Researchers from Heidelberg University and the German Cancer Research Center have succeeded in mapping the intracellular topology by observing proteins in living cells on multiple time and length scales.

By developing a new fluorescence microscopy-based technique, the researchers were able to measure how long it takes proteins to move over distances ranging from 0.2 to 3 micrometres in living cells. Under the direction of Dr. Karsten Rippe, the team analysed the data and developed a mathematical model to reconstruct the intracellular structures. The results of their research were published in “Nature Communications”.

Cellular structures such as membranes, the cytoskeleton and the DNA genome form a dynamic three-dimensional maze inside the cell. Proteins have to find their way through it to reach the sites where they are active. Accordingly, the spatial structure of the cell’s interior is a key factor for protein transport and cell function. “Cellular structures have been visualized in many microscopic studies.

But it is still unclear how the diffusing protein in the cell ‘senses’ this internal network of obstacles,” says Dr. Rippe. To address this question, his team devised a method to infer the cellular topology from the random motion of proteins. The team built their own fluorescence spectroscopy system to observe fluorescent proteins. According to Karsten Rippe, the largest obstacles were densely packed areas of DNA in the cell nucleus.

“A protein in a cell moves much like a marble in a labyrinth game, jockeying its way through the maze,” said Michael Baum, the study’s first author, who pursued the research as part of his PhD thesis at Heidelberg University. The marbles move easily over short distances, but then they encounter an obstacle and are slowed down as they move along.

This results in “stop-and-go” travelling with reduced average speed over longer distances. In their analysis of protein movements, the Heidelberg researchers mapped distances and corresponding translocation times needed for this travel, resulting in the average distance between obstacles. A mathematical model based on this data allowed the scientists to describe the measured movement of the proteins in the cell and reconstruct its topology – at a significantly better resolution than currently possible with light microscopy images, as Dr. Rippe points out.

“The obstacle structure encountered by a protein moving through the cell is porous, much like a sponge,” explains the Heidelberg researcher. Larger proteins were occasionally trapped in this dynamic structure for several minutes. Furthermore, drugs used in chemotherapy or to treat malaria were found to affect the mobility of proteins in the nucleus and make the DNA thicket more permeable. Dr. Rippe and his team now plan to apply their new approach in further experiments at the BioQuant Centre of Heidelberg University and the German Cancer Research Center. They will focus on the interrelation between drug-induced changes in the cell structure and protein transport as well as the disease-related deregulation of this process.

Funding for the research was provided by the Federal Ministry of Education and Research.

Additional information:
http://malone.bioquant.uni-heidelberg.de

Original publication:
M. Baum, F. Erdel, M. Wachsmuth & K. Rippe: Retrieving the intracellular topology from multi-scale protein mobility mapping in living cells. Nature Communications 5, 4494 (24 July 2014), doi: 10.1038/ncomms5494

Contact:
Dr. Karsten Rippe
BioQuant Centre
Phone: +49 6221 54-51376
Karsten.Rippe@bioquant.uni-heidelberg.de

Communications and Marketing
Press Office
Phone: +49 6221 542311
presse@rektorat.uni-heidelberg.de

Marietta Fuhrmann-Koch | idw - Informationsdienst Wissenschaft

Further reports about: BioQuant Cancer Cell DNA Interior Nature Phone fluorescence movements proteins structure structures topology

More articles from Life Sciences:

nachricht The herbivore dilemma: How corn plants fights off simultaneous attacks
09.02.2016 | Boyce Thompson Institute for Plant Research

nachricht Shedding Light on Bacteria
09.02.2016 | Albert-Ludwigs-Universität Freiburg im Breisgau

All articles from Life Sciences >>>

The most recent press releases about innovation >>>

Die letzten 5 Focus-News des innovations-reports im Überblick:

Im Focus: New study: How stable is the West Antarctic Ice Sheet?

Exceeding critical temperature limits in the Southern Ocean may cause the collapse of ice sheets and a sharp rise in sea levels

A future warming of the Southern Ocean caused by rising greenhouse gas concentrations in the atmosphere may severely disrupt the stability of the West...

Im Focus: Superconductivity: footballs with no resistance

Indications of light-induced lossless electricity transmission in fullerenes contribute to the search for superconducting materials for practical applications.

Superconductors have long been confined to niche applications, due to the fact that the highest temperature at which even the best of these materials becomes...

Im Focus: Wbp2 is a novel deafness gene

Researchers at King’s College London and the Wellcome Trust Sanger Institute in the United Kingdom have for the first time demonstrated a direct link between the Wbp2 gene and progressive hearing loss. The scientists report that the loss of Wbp2 expression leads to progressive high-frequency hearing loss in mouse as well as in two clinical cases of children with deafness with no other obvious features. The results are published in EMBO Molecular Medicine.

The scientists have shown that hearing impairment is linked to hormonal signalling rather than to hair cell degeneration. Wbp2 is known as a transcriptional...

Im Focus: From allergens to anodes: Pollen derived battery electrodes

Pollens, the bane of allergy sufferers, could represent a boon for battery makers: Recent research has suggested their potential use as anodes in lithium-ion batteries.

"Our findings have demonstrated that renewable pollens could produce carbon architectures for anode applications in energy storage devices," said Vilas Pol, an...

Im Focus: Automated driving: Steering without limits

OmniSteer project to increase automobiles’ urban maneuverability begins with a € 3.4 million budget

Automobiles increase the mobility of their users. However, their maneuverability is pushed to the limit by cramped inner city conditions. Those who need to...

All Focus news of the innovation-report >>>

Anzeige

Anzeige

Event News

Travel grants available: Meet the world’s most proficient mathematicians and computer scientists

09.02.2016 | Event News

AKL’16: Experience Laser Technology Live in Europe´s Largest Laser Application Center!

02.02.2016 | Event News

From intelligent knee braces to anti-theft backpacks

26.01.2016 | Event News

 
Latest News

Travel grants available: Meet the world’s most proficient mathematicians and computer scientists

09.02.2016 | Event News

Body temperature triggers newly developed polymer to change shape

09.02.2016 | Materials Sciences

Using renewable energy in heating networks more efficiently

09.02.2016 | Power and Electrical Engineering

VideoLinks
B2B-VideoLinks
More VideoLinks >>>