Researchers at Washington University in St. Louis, the University of Illinois at Urbana-Champaign, Uppsala University, UCLA and more than 20 other institutions collaborated on the analysis, which appears in the journal Nature.
Recognizing the unique relevance of songbirds to human biology and medicine, the National Human Genome Research Institute provided the main support for the sequencing effort.
Much like humans learn speech, songbirds learn their vocalizations – an ability rare in the animal kingdom. Zebra finches have been domesticated and are easy to rear, making them an accessible subject for scientific study, said David Clayton, a professor of neuroscience and cell and developmental biology at the University of Illinois and leader of the group that proposed and organized the genome sequencing effort.
“There is a real diversity of investigators doing research on the zebra finch,” said Clayton, who is also an affiliate of the Institute for Genomic Biology at Illinois. “It is a unique animal model for things like sexual differentiation in the brain, sensitivity to the environment, local communication, speech, learning, steroid responses and social behavior.”
One striking outcome of the genome analysis is the discovery that song communication activates large and complex gene regulatory networks in the brain. A 2009 study conducted in Clayton’s lab showed that hundreds of genes are switched on or off in the zebra finch brain quickly as the bird learns the sound of a new song. Now, using the new genome sequence, the researchers observe that many of these song-responsive genes do not encode proteins but give rise to “non-coding” RNAs. Among the genes that are suppressed immediately after a zebra finch hears a new song, two-thirds are non-coding RNAs. Non-coding RNAs are believed to interact with protein-coding messenger RNAs (mRNAs) to regulate their stability, intracellular location and translation into protein.
“When we talk about the genes in a genome, many people still think exclusively in terms of protein-coding genes,” Clayton said. “We’re not the first to recognize that these non-coding RNAs are important. They’ve been studied a lot in the context of embryonic development, for example. But certainly this is a surprising observation that these things are also active in the moment-to-moment operation of the brain.”
As expected, the finch genome shares certain characteristics with that of the chicken, the only other bird genome sequenced to date. But a comparison of the two also reveals some striking differences. Some families of genes have expanded in the zebra finch, for example, and individual chromosome rearrangements have occurred since the two lineages diverged about 100 million years ago.
The zebra finch genome also is unusual in that it does not appear to fully balance the “dosage” of genes found on the sex chromosome, Z, between males and females. Males have two copies of the Z chromosome, while females carry one Z and one W chromosome. As a result, most genes found on the Z chromosome are expressed at higher levels in male finches than in females. This could explain some of the behavioral differences seen between male and female finches, the researchers suggest.
The analysis also found that some genes related to birdsong have undergone rapid evolution in the finch, suggesting that over evolutionary time these genes contributed to songbird survival and perhaps helped songbirds take over new ecological niches.
The new findings are relevant to an understanding of human vocal communication, Clayton said.
“There is a functional developmental parallel between the way a bird learns to sing and a human learns to speak,” he said. “The avian brain is quite different in superficial detail from the mammalian brain or the human brain, but some striking parallels have emerged.”
The organizing committee of the zebra finch genome sequencing project also included Research Professor of Genetics Wesley C. Warren of Washington University School of Medicine; Professor in Evolutionary Biology Hans Ellegren of Uppsala University; and Distinguished Professor of Integrative Biology and Physiology Arthur P. Arnold, of UCLA.
Diana Yates | University of Illinois
Making fuel out of thick air
08.12.2017 | DOE/Argonne National Laboratory
‘Spying’ on the hidden geometry of complex networks through machine intelligence
08.12.2017 | Technische Universität Dresden
Tiny pores at a cell's entryway act as miniature bouncers, letting in some electrically charged atoms--ions--but blocking others. Operating as exquisitely sensitive filters, these "ion channels" play a critical role in biological functions such as muscle contraction and the firing of brain cells.
To rapidly transport the right ions through the cell membrane, the tiny channels rely on a complex interplay between the ions and surrounding molecules,...
The miniaturization of the current technology of storage media is hindered by fundamental limits of quantum mechanics. A new approach consists in using so-called spin-crossover molecules as the smallest possible storage unit. Similar to normal hard drives, these special molecules can save information via their magnetic state. A research team from Kiel University has now managed to successfully place a new class of spin-crossover molecules onto a surface and to improve the molecule’s storage capacity. The storage density of conventional hard drives could therefore theoretically be increased by more than one hundred fold. The study has been published in the scientific journal Nano Letters.
Over the past few years, the building blocks of storage media have gotten ever smaller. But further miniaturization of the current technology is hindered by...
With innovative experiments, researchers at the Helmholtz-Zentrums Geesthacht and the Technical University Hamburg unravel why tiny metallic structures are extremely strong
Light-weight and simultaneously strong – porous metallic nanomaterials promise interesting applications as, for instance, for future aeroplanes with enhanced...
An interdisciplinary group of researchers interfaced individual bacteria with a computer to build a hybrid bio-digital circuit - Study published in Nature Communications
Scientists at the Institute of Science and Technology Austria (IST Austria) have managed to control the behavior of individual bacteria by connecting them to a...
Physicists in the Laboratory for Attosecond Physics (run jointly by LMU Munich and the Max Planck Institute for Quantum Optics) have developed an attosecond electron microscope that allows them to visualize the dispersion of light in time and space, and observe the motions of electrons in atoms.
The most basic of all physical interactions in nature is that between light and matter. This interaction takes place in attosecond times (i.e. billionths of a...
11.12.2017 | Event News
08.12.2017 | Event News
07.12.2017 | Event News
11.12.2017 | Physics and Astronomy
11.12.2017 | Earth Sciences
11.12.2017 | Information Technology