Genomics reveals mechanism of heat resistance in bacteria

Warm-blooded creatures maintain a relatively stable body temperature that cannot tolerate the stress of intense heat (or cold). When it’s too hot proteins destabilize and degrade–in some cases, with fatal results. But some bacterial and archaeal organisms appear to defy nature (as we think of it) by flourishing in extremely high temperatures. The archaeal microbe Pyrobaculum aerophilum, for example–originally found in a boiling marine water hole in Italy–thrives at ~100 °C (212 °F).

Published online this week in the open-access journal PLoS Biology Todd Yeates and colleagues from UCLA have investigated the mechanisms that engineer this remarkable heat resistance. By way of an elegant analysis of publicly available genome sequence and protein structure data, they answer the question: how do these thermophilic bacteria and archaea manage to maintain active, stable proteins at such high temperatures? The authors found that proteins from P. aerophilum along with some other thermophiles have many disulfide bonds (covalent bonds between two spatially proximate cysteines), which are known to improve stability.

By mapping intracellular gene sequences from 199 prokaryote genomes onto sequence-related proteins with known three-dimensional structures, they produced structural models which revealed when disulfide bonds are likely to form. A bias was found for disulfides in a set of thermophilic genomes. To prove that these predictions really do form disulfide bonds, the authors solved the structure of one protein from P. aerophilum–which was indeed stabilized by three disulfide bonds.

Disulfide bonds are more commonly formed outside or between cells in multicellular organisms. The high numbers of bonds observed in these prokaryotes challenge our ideas of how disulfide bonds form. Given the difficulty for disulfides to form in such organisms, the authors investigated which proteins are present in the disulfide-rich organisms as compared with the proteins in other organisms (also known as phylogenetic profiling). They found a protein called protein disulfide oxidoreductase (PDO) present in all of the disulfide-rich thermophiles which is not seen in the other prokaryotes. As its name suggests, this protein likely plays a key role in the formation of disulfides in these heat-tolerant bugs.

Yeates and colleagues have considerably advanced our understanding of how proteins withstand and function at high temperatures via stabilizing disulfide bonds in these thermophilic organisms. Yet, since this correlation of extra disulfides and the PDO is not common to all thermophiles, it is likely that this is not the only method employed in heat resistance. Probably several different mechanisms are employed to enable thermophiles to flourish in extreme conditions. As the authors show here, genome sequence and structure data can help us to uncover these mechanisms.