Forum for Science, Industry and Business

Sponsored by:     3M 
Search our Site:

 

The key to the lock that controls nitrogen fixation

04.11.2004


“Bacteria that fix nitrogen only do so when they sense that there is very little nitrogen available in their environment,” says Professor Ray Dixon (Project Leader at the JIC. “Normally the genes for nitrogen fixation are locked off and only unlocked and used when nitrogen levels in the environment fall. We have discovered a key piece of biochemistry that allows us to better understand how the lock operates and so may allow us to alter how it works”.

The bacterium Azotobacter vinelandii is able to fix atmospheric nitrogen when available nitrogen in its environment falls below a threshold level. Nitrogen fixation requires a great deal of energy and so the genes that carry out nitrogen fixation (so called nif genes) are tightly regulated and switched off when not required.

The nif genes are regulated by the action of two proteins, called NifL and NifA. NifA stimulates the activity of nif genes, while NifL normally binds to NifA and renders it inactive. Thus whether the nif genes are active or not depends on the interaction between these two proteins. Both proteins are sensitive to biochemical signals that occur in the bacterial cell when conditions are right for nitrogen fixation. The proteins’ physical shape and structure alters in response to these signals and this affects their ability to bind to one another. The result is that, when conditions are right for nitrogen fixation, NifA is released from the grip of NifL and is then able to stimulate the activity of the nif genes and so switches on nitrogen fixation by the cell.



The latest research has identified a single amino acid change in the NifL protein that prevents the molecule releasing NifA when the appropriate signals are present [2]. This gives the scientists an important clue about the key processes which operate the lock that controls nitrogen fixation.

The discovery will be reported in the international science journal Proceedings of the National Academy of Sciences US, and is available on line in the PNAS Online Early Edition [3].

[1]
The John Innes Centre (JIC), Norwich, UK is an independent, world-leading research centre in plant and microbial sciences. The JIC has over 850 staff and students. JIC carries out high quality fundamental, strategic and applied research to understand how plants and microbes work at the molecular, cellular and genetic levels. The JIC also trains scientists and students, collaborates with many other research laboratories and communicates its science to end-users and the general public. The JIC is grant-aided by the Biotechnology and Biological Sciences Research Council.

[2]
NifA is a sigma factor dependent transcriptional activator that stimulate nif gene activity. Its action is blocked by protein-protein binding with NifL, an anti-activator. NifL is sensitive to the redox and fixed nitrogen status of the cell. Binding of 2-oxoglutarate (an indicator of cell carbon status) to NifA prevents NifL from inhibiting NifA . A critical arginine residue (R306) has been identified in NifL that is required to release NifA under appropriate environmental conditions. Mutation of this residue blocks release of NifA from NifL. The substitution of this arginine significantly alters the conformation of the NifL molecule and inhibits NifA’s response to 2-oxoglutarate. It appears that arginine 306 is critical for coupling the response of NifL to the cellular redox and fixed nitrogen status to a conformational switch that prevents NifL from inhibiting NifA under conditions suitable for nitrogen fixation.

[3]
A crucial arginine residue is required for a conformational switch in NifL to regulate nitrogen fixation in Azotobacter vinelandii. I. Martinez-Argudo, R. Little and R. Dixon. Article #04-05312

Ray Mathias | alfa
Further information:
http://www.bbsrc.ac.uk
http://www.jic.ac.uk

More articles from Life Sciences:

nachricht Researchers identify potentially druggable mutant p53 proteins that promote cancer growth
09.12.2016 | Cold Spring Harbor Laboratory

nachricht Plant-based substance boosts eyelash growth
09.12.2016 | Fraunhofer-Institut für Angewandte Polymerforschung IAP

All articles from Life Sciences >>>

The most recent press releases about innovation >>>

Die letzten 5 Focus-News des innovations-reports im Überblick:

Im Focus: Electron highway inside crystal

Physicists of the University of Würzburg have made an astonishing discovery in a specific type of topological insulators. The effect is due to the structure of the materials used. The researchers have now published their work in the journal Science.

Topological insulators are currently the hot topic in physics according to the newspaper Neue Zürcher Zeitung. Only a few weeks ago, their importance was...

Im Focus: Significantly more productivity in USP lasers

In recent years, lasers with ultrashort pulses (USP) down to the femtosecond range have become established on an industrial scale. They could advance some applications with the much-lauded “cold ablation” – if that meant they would then achieve more throughput. A new generation of process engineering that will address this issue in particular will be discussed at the “4th UKP Workshop – Ultrafast Laser Technology” in April 2017.

Even back in the 1990s, scientists were comparing materials processing with nanosecond, picosecond and femtosesecond pulses. The result was surprising:...

Im Focus: Shape matters when light meets atom

Mapping the interaction of a single atom with a single photon may inform design of quantum devices

Have you ever wondered how you see the world? Vision is about photons of light, which are packets of energy, interacting with the atoms or molecules in what...

Im Focus: Novel silicon etching technique crafts 3-D gradient refractive index micro-optics

A multi-institutional research collaboration has created a novel approach for fabricating three-dimensional micro-optics through the shape-defined formation of porous silicon (PSi), with broad impacts in integrated optoelectronics, imaging, and photovoltaics.

Working with colleagues at Stanford and The Dow Chemical Company, researchers at the University of Illinois at Urbana-Champaign fabricated 3-D birefringent...

Im Focus: Quantum Particles Form Droplets

In experiments with magnetic atoms conducted at extremely low temperatures, scientists have demonstrated a unique phase of matter: The atoms form a new type of quantum liquid or quantum droplet state. These so called quantum droplets may preserve their form in absence of external confinement because of quantum effects. The joint team of experimental physicists from Innsbruck and theoretical physicists from Hannover report on their findings in the journal Physical Review X.

“Our Quantum droplets are in the gas phase but they still drop like a rock,” explains experimental physicist Francesca Ferlaino when talking about the...

All Focus news of the innovation-report >>>

Anzeige

Anzeige

Event News

ICTM Conference 2017: Production technology for turbomachine manufacturing of the future

16.11.2016 | Event News

Innovation Day Laser Technology – Laser Additive Manufacturing

01.11.2016 | Event News

#IC2S2: When Social Science meets Computer Science - GESIS will host the IC2S2 conference 2017

14.10.2016 | Event News

 
Latest News

Researchers identify potentially druggable mutant p53 proteins that promote cancer growth

09.12.2016 | Life Sciences

Scientists produce a new roadmap for guiding development & conservation in the Amazon

09.12.2016 | Ecology, The Environment and Conservation

Satellites, airport visibility readings shed light on troops' exposure to air pollution

09.12.2016 | Health and Medicine

VideoLinks
B2B-VideoLinks
More VideoLinks >>>