When biologists want to compare different sequences of DNA or protein, it’s as simple as plugging the information into a browser and pressing enter. Within 15 seconds, an online software tool contrasts one sequence of DNA with up to 18 million others catalogued in public databases. Now, a software tool developed by Whitehead Institute scientists promises to apply this same computational muscle to the far more intricate world of protein interaction networks, giving researchers a new view of the complexities of cellular life.
DNA sequencing technologies allow scientists to easily identify genes and their nucleotide building blocks -- linear strings of information represented by the letters A, C, T and G. The wide accessibility of these technologies has enabled both companies and academic labs to assemble huge libraries of genomic information. Computer engineers, in turn, have helped scientists navigate these oceans of data through tools such as BLAST, the primary software platform that scientists use to compare protein and DNA sequences. However, many researchers believe that the next phase of genomics research will be to map out interaction networks -- the cell’s internal wiring system through which genes and proteins communicate.
"The 80s and 90s were about sequences," says Trey Ideker, a former Whitehead Fellow who recently was named an assistant professor of bioengineering at University of California, San Diego. "Now we’re starting to see newer types of technologies -- like microarrays -- that allow us to look at how a cell, in its entirety, responds to drugs and other kinds of stimuli. These technologies will revolutionize biology." Already, researchers like Whitehead’s Rick Young are beginning to assemble libraries of cellular network pathway maps using microarrays.
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More and more automobile companies are focusing on body parts made of carbon fiber reinforced plastics (CFRP). However, manufacturing and repair costs must be further reduced in order to make CFRP more economical in use. Together with the Volkswagen AG and five other partners in the project HolQueSt 3D, the Laser Zentrum Hannover e.V. (LZH) has developed laser processes for the automatic trimming, drilling and repair of three-dimensional components.
Automated manufacturing processes are the basis for ultimately establishing the series production of CFRP components. In the project HolQueSt 3D, the LZH has...
Reflecting the structure of composites found in nature and the ancient world, researchers at the University of Illinois at Urbana-Champaign have synthesized thin carbon nanotube (CNT) textiles that exhibit both high electrical conductivity and a level of toughness that is about fifty times higher than copper films, currently used in electronics.
"The structural robustness of thin metal films has significant importance for the reliable operation of smart skin and flexible electronics including...
The nearby, giant radio galaxy M87 hosts a supermassive black hole (BH) and is well-known for its bright jet dominating the spectrum over ten orders of magnitude in frequency. Due to its proximity, jet prominence, and the large black hole mass, M87 is the best laboratory for investigating the formation, acceleration, and collimation of relativistic jets. A research team led by Silke Britzen from the Max Planck Institute for Radio Astronomy in Bonn, Germany, has found strong indication for turbulent processes connecting the accretion disk and the jet of that galaxy providing insights into the longstanding problem of the origin of astrophysical jets.
Supermassive black holes form some of the most enigmatic phenomena in astrophysics. Their enormous energy output is supposed to be generated by the...
The probability to find a certain number of photons inside a laser pulse usually corresponds to a classical distribution of independent events, the so-called...
Microprocessors based on atomically thin materials hold the promise of the evolution of traditional processors as well as new applications in the field of flexible electronics. Now, a TU Wien research team led by Thomas Müller has made a breakthrough in this field as part of an ongoing research project.
Two-dimensional materials, or 2D materials for short, are extremely versatile, although – or often more precisely because – they are made up of just one or a...
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