Forum for Science, Industry and Business

Sponsored by:     3M 
Search our Site:

 

Genomic Standards for the Future: Setting the Guidelines

20.05.2008
The pace of genomic sequencing has increased dramatically in the last years due to new sequencing techniques.

At present, more than 1000 complete genomes of single cell organisms (Bacteria and Archaea) and 100 Eukaryotes (plants, animals, algae) are available in public genome databases like EMBL and GenBank. Now, an international consortium of scientists has published a new set of rules describing the minimum information and quality criteria for any genomic dataset in the international scientific journal Nature Biotechnology.

The new guideline of the Genomics Standard Consortium (GSC) is called "Minimum Information about a Genome Sequence" (MIGS) and is accessible at http://gensc.org/.

Two scientists from the Max Planck Institute for Marine Microbiology in Bremen are in the GSC team which consists of nearly all big database providers and sequencing centers. Prof. Dr. Frank Oliver Glöckner is hopeful: " We have worked now for more than seven years in the field of marine environmental (meta) genomics. The MIGS specifications and standards will be a major step forward in discovering the secrets hidden in the genes of our environmental microorganisms".

... more about:
»GSC »MIGS »genomic

The GSC team has put a lot of effort in the development of these new rules, as any new standard will only be accepted by the community, if it can be easily used and facilitates the exchange of data within the community. Like the introduction of the Web internet standards a couple of years ago, the MIGS standard is intended to improve the flow of data in the life sciences.

The major goal of GSC and the institutions running the public genomic databases (e.g. GenBank and EMBL) was to standardize genome information in a way that they are compatible to present and future applications. These requirements are met: anybody with an internet access can scan the genomic data sets on http://gensc.org/. Additional information about the organisms, e.g. description of their habitat or origin, will be stored in MIGS format from now on. At present, these vital information can be retrieved only by manually screening the scientific literature.

Manfred Schlösser

Contact
Prof. Dr. Frank Oliver Glöckner +49 (0)421 2028970 , floecknmpi-bremen.de
Renzo Kottmann, MSc +49 (0)421 2028974 , rkottmanmpi-bremen.de
Press officer
Dr. Manfred Schlösser +49 (0)421 2028704, mschloesmpi-bremen.de
Literature
Dawn Field et al., (2008) The Minimum Information about a Genome Sequence, Nature Biotechnology 26, 541 - 547.

Dr. Manfred Schloesser | Max-Planck-Gesellschaft
Further information:
http://www.mpi-bremen.de
http://gensc.org/

Further reports about: GSC MIGS genomic

More articles from Life Sciences:

nachricht Water forms 'spine of hydration' around DNA, group finds
26.05.2017 | Cornell University

nachricht How herpesviruses win the footrace against the immune system
26.05.2017 | Helmholtz-Zentrum für Infektionsforschung

All articles from Life Sciences >>>

The most recent press releases about innovation >>>

Die letzten 5 Focus-News des innovations-reports im Überblick:

Im Focus: Can the immune system be boosted against Staphylococcus aureus by delivery of messenger RNA?

Staphylococcus aureus is a feared pathogen (MRSA, multi-resistant S. aureus) due to frequent resistances against many antibiotics, especially in hospital infections. Researchers at the Paul-Ehrlich-Institut have identified immunological processes that prevent a successful immune response directed against the pathogenic agent. The delivery of bacterial proteins with RNA adjuvant or messenger RNA (mRNA) into immune cells allows the re-direction of the immune response towards an active defense against S. aureus. This could be of significant importance for the development of an effective vaccine. PLOS Pathogens has published these research results online on 25 May 2017.

Staphylococcus aureus (S. aureus) is a bacterium that colonizes by far more than half of the skin and the mucosa of adults, usually without causing infections....

Im Focus: A quantum walk of photons

Physicists from the University of Würzburg are capable of generating identical looking single light particles at the push of a button. Two new studies now demonstrate the potential this method holds.

The quantum computer has fuelled the imagination of scientists for decades: It is based on fundamentally different phenomena than a conventional computer....

Im Focus: Turmoil in sluggish electrons’ existence

An international team of physicists has monitored the scattering behaviour of electrons in a non-conducting material in real-time. Their insights could be beneficial for radiotherapy.

We can refer to electrons in non-conducting materials as ‘sluggish’. Typically, they remain fixed in a location, deep inside an atomic composite. It is hence...

Im Focus: Wafer-thin Magnetic Materials Developed for Future Quantum Technologies

Two-dimensional magnetic structures are regarded as a promising material for new types of data storage, since the magnetic properties of individual molecular building blocks can be investigated and modified. For the first time, researchers have now produced a wafer-thin ferrimagnet, in which molecules with different magnetic centers arrange themselves on a gold surface to form a checkerboard pattern. Scientists at the Swiss Nanoscience Institute at the University of Basel and the Paul Scherrer Institute published their findings in the journal Nature Communications.

Ferrimagnets are composed of two centers which are magnetized at different strengths and point in opposing directions. Two-dimensional, quasi-flat ferrimagnets...

Im Focus: World's thinnest hologram paves path to new 3-D world

Nano-hologram paves way for integration of 3-D holography into everyday electronics

An Australian-Chinese research team has created the world's thinnest hologram, paving the way towards the integration of 3D holography into everyday...

All Focus news of the innovation-report >>>

Anzeige

Anzeige

Event News

Marine Conservation: IASS Contributes to UN Ocean Conference in New York on 5-9 June

24.05.2017 | Event News

AWK Aachen Machine Tool Colloquium 2017: Internet of Production for Agile Enterprises

23.05.2017 | Event News

Dortmund MST Conference presents Individualized Healthcare Solutions with micro and nanotechnology

22.05.2017 | Event News

 
Latest News

How herpesviruses win the footrace against the immune system

26.05.2017 | Life Sciences

Water forms 'spine of hydration' around DNA, group finds

26.05.2017 | Life Sciences

First Juno science results supported by University of Leicester's Jupiter 'forecast'

26.05.2017 | Physics and Astronomy

VideoLinks
B2B-VideoLinks
More VideoLinks >>>