This sequestered carbon is more than 250 times the amount of greenhouse gas emissions attributed to the United States in the year 2009. As global temperatures slowly rise, however, so too do concerns regarding the potential impacts upon the carbon cycle when the permafrost thaws and releases the carbon that has been trapped for eons. Like so many of the planet's critical environmental processes, the smallest players—microbes—have the most significant influence over the eventual outcome.
To answer this question, researchers from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), the Earth Sciences Division (ESD) within Berkeley Lab, and the U.S. Geological Survey collaborated to understand how the microbes found in permafrost respond to their warming environment. Among the findings, published online November 6 in the journal Nature, is the draft genome of a novel microbe that produces methane, a far more potent greenhouse gas than carbon dioxide. This microbe, not yet named, lives in the permafrost, and was assembled out of the collection of genomes—the metagenome—isolated from the frigid soil. The assembly challenge is similar to building one complete jigsaw puzzle from a large collection of pieces from many different puzzles.
"The permafrost is poised to become a major source of greenhouse gases as the temperature in the Arctic is expected to increase dramatically compared to the expected temperature increase in many other regions of the world," said ESD's Janet Jansson, corresponding author and initiator of the study (first supported by a grant to her from DOE Laboratory Directed Research and Development funds). "By applying metagenomics to study microbial community composition and function, we can help to answer questions about how the currently uncultivated and unstudied microbial species residing in permafrost cycle organic carbon and release greenhouse gases during thaw," Jansson said. "This will provide valuable information that could lead to improved carbon cycle models and eventual mitigation strategies."
According to the U.S. Environmental Protection Agency, in 2009 fossil fuel combustion accounted for 5.2 billion metric tons of the nation's carbon dioxide emissions, a tiny fraction (about 3/10 of 1 percent) of the carbon dioxide trapped in the Arctic permafrost. Understanding the microbial processes in the frozen soils and the impacts of microbial activity on carbon dioxide processes, has been a project of study co-author and USGS researcher Mark Waldrop, whose 2010 Community Sequencing Program project, another with the DOE JGI (in collaboration with Jansson), focuses on comparing the short-term microbial response of the thawing permafrost to the longer-term processes.
Waldrop cored meter-deep permafrost samples from a peaty black spruce forest along Hess Creek, Alaska. Each sample was then divided to distinguish between the seasonally thawed "active" layer, which comprised the top third of the core, and the permanently frozen "permafrost" horizon underneath. The samples were incubated during thaw at 5°C and then sent to the Jansson lab for DNA extraction and analyses At the DOE JGI, the team led by Director Eddy Rubin and his postdoctoral fellow Rachel Mackelprang, (now at California State University-Northridge) sequenced microbial DNA from the samples. "These microbial communities are extremely diverse," said Mackelprang. "A single gram of soil may contain thousands of different bacterial species and billions of cells. Additionally, most of these microbes cannot be grown in the laboratory, making this an extremely difficult area to study." The data were then analyzed in collaboration with Jansson and her team at ESD, including Kristen DeAngelis, Maude David, and Krystle Chavarria.
At DOE JGI, Mackelprang and her colleagues generated nearly 40 billion bases of raw DNA sequence, necessary due to the high microbial diversity of the soil. They identified several microbes that produced methane as a byproduct, and were able to assemble a draft genome of a novel methanogen. "This is the first example of a successful assembly of a draft genome from a highly complex soil metagenome," the authors wrote. "The abundance of this novel methanogen suggests that it may be an important player in methane production under frozen conditions." Additionally, the genomic data revealed that the microbe had genes for nitrogen fixation, making this study also the first to describe a potentially nitrogen-fixing methanogen in permafrost soil.
The researchers identified many genes involved in carbon and nitrogen cycling in the metagenomic data, and found that their levels of abundance shifted in response to their thawing habitat. "These detailed analyses reveal for the first time the rapid and dynamic response of permafrost microbial communities to thaw," they concluded. "The thaw-induced shifts that we detected directly support conceptual models of carbon and nitrogen cycling in arctic soils, in which microbes play a central role in greenhouse gas emissions and destabilization of stored permafrost carbon."
The U.S. Department of Energy Joint Genome Institute, supported by the DOE Office of Science, is committed to advancing genomics in support of DOE missions related to clean energy generation and environmental characterization and cleanup. DOE JGI, headquartered in Walnut Creek, Calif., provides integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to these challenges. Follow DOE JGI on Twitter.
Lawrence Berkeley National Laboratory addresses the world's most urgent scientific challenges by advancing sustainable energy, protecting human health, creating new materials, and revealing the origin and fate of the universe. Founded in 1931, Berkeley Lab's scientific expertise has been recognized with 13 Nobel prizes. The University of California manages Berkeley Lab for the U.S. Department of Energy's Office of Science. For more, visit www.lbl.gov.
David Gilbert | EurekAlert!
New technique unveils 'matrix' inside tissues and tumors
29.06.2017 | University of Copenhagen The Faculty of Health and Medical Sciences
Designed proteins to treat muscular dystrophy
29.06.2017 | Universität Basel
Computer scientists use wave packet theory to develop realistic, detailed water wave simulations in real time. Their results will be presented at this year’s SIGGRAPH conference.
Think about the last time you were at a lake, river, or the ocean. Remember the ripples of the water, the waves crashing against the rocks, the wake following...
An international team of scientists has proposed a new multi-disciplinary approach in which an array of new technologies will allow us to map biodiversity and the risks that wildlife is facing at the scale of whole landscapes. The findings are published in Nature Ecology and Evolution. This international research is led by the Kunming Institute of Zoology from China, University of East Anglia, University of Leicester and the Leibniz Institute for Zoo and Wildlife Research.
Using a combination of satellite and ground data, the team proposes that it is now possible to map biodiversity with an accuracy that has not been previously...
Heatwaves in the Arctic, longer periods of vegetation in Europe, severe floods in West Africa – starting in 2021, scientists want to explore the emissions of the greenhouse gas methane with the German-French satellite MERLIN. This is made possible by a new robust laser system of the Fraunhofer Institute for Laser Technology ILT in Aachen, which achieves unprecedented measurement accuracy.
Methane is primarily the result of the decomposition of organic matter. The gas has a 25 times greater warming potential than carbon dioxide, but is not as...
Hydrogen is regarded as the energy source of the future: It is produced with solar power and can be used to generate heat and electricity in fuel cells. Empa researchers have now succeeded in decoding the movement of hydrogen ions in crystals – a key step towards more efficient energy conversion in the hydrogen industry of tomorrow.
As charge carriers, electrons and ions play the leading role in electrochemical energy storage devices and converters such as batteries and fuel cells. Proton...
Scientists from the Excellence Cluster Universe at the Ludwig-Maximilians-Universität Munich have establised "Cosmowebportal", a unique data centre for cosmological simulations located at the Leibniz Supercomputing Centre (LRZ) of the Bavarian Academy of Sciences. The complete results of a series of large hydrodynamical cosmological simulations are available, with data volumes typically exceeding several hundred terabytes. Scientists worldwide can interactively explore these complex simulations via a web interface and directly access the results.
With current telescopes, scientists can observe our Universe’s galaxies and galaxy clusters and their distribution along an invisible cosmic web. From the...
19.06.2017 | Event News
13.06.2017 | Event News
13.06.2017 | Event News
29.06.2017 | Physics and Astronomy
29.06.2017 | Life Sciences
29.06.2017 | Health and Medicine