Iron plays an important role in almost every life form. Low iron can lead to deficiency symptoms and reduced growth, whereas too much iron may harm biomolecules like DNA. Max Planck researchers from Jena and Tuebingen have now elucidated the spatial structure of a bacterial enzyme in Microbacterium arborescens which is able to accumulate several hundred iron ions in its center - depending on the iron supply situation in its environment: for example in the larval gut of the Beet Armyworm Spodoptera exigua.
Molecular structure of the enzyme N-acyl amino acid hydrolase (AAH) from Microbacterium arborescens: Representation of the protein surface with negative (red) and positive (blue) charges. The triangle marks the iron uptake pore. Kornelius Zeth, MPI Tuebingen
Molecular structure of the enzyme N-acyl amino acid hydrolase (AAH) from Microbacterium arborescens: Longitudinal section through the pore along with a representation of the iron uptake mechanism. Entering Fe(II)ions, surrounded by 6 water molecules (spatial representation in the box on the right below), are oxidized to Fe(III)ions with a simultaneous loss of their hydrate shell. The Fe(III) is stored as Fe2O3 in the center of the macromolecule. Kornelius Zeth, MPI Tuebingen
With its additional peroxidase activity the enzyme inhibits the occurrence of cell-damaging oxygen radicals. Moreover, it catalyzes the hydrolysis and formation of N-acyl glutamines (conjugates of the amino acid glutamine with fatty acids). The plant recognizes the larval pest with the help of these conjugates and initiates its chemical defense against invader. Structurally related enzymes are produced by other bacteria and are collectively termed as DNA protecting proteins under starvation (DPS). (The Journal of Biological Chemistry. DOI: 10.1074/jbc.M111.246108)
Microbes are omnipresent on earth. They are found as free-living microorganisms as well as in communities with other higher organisms. Thanks to modern biological techniques we are now able to address the complex communities and study the role of individual microorganisms and enzymes in more detail.
Microbacterium arborescens is a bacterium, which can be found in the guts of herbivorous caterpillars. The Department of Bioorganic Chemistry at the Max Planck Institute for Chemical Ecology studies interactions between insects and microorganisms which live in their digestive system. What is the advantage for both, insects and microbes? How strongly do they depend on each other? Do microbes play a role in mediating interactions between herbivorous insects and host plants? In the course of the experiments to answer these questions the scientists came across an enzyme they had isolated from M. arborescens, a resident in the gut of the Beet Armyworm Spodoptera exigua. It was called N-acyl amino acid hydrolase (AAH) because of its catalytic function: it catalyzes the synthesis and hydrolysis of conjugates of the amino acid glutamine with fatty acids. The N-acyl glutamines enter the infested plant via oral secretions and intestinal contents of the larvae and trigger the plant's defense responses. After cloning and sequencing the AAH encoding gene the scientists discovered an interesting result: AAH is closely related to proteins from other microorganisms: the "DNA protection during starvation (DPS)" proteins, which bind to DNA molecules and protect them by crystallization or by removal of dangerous OH• radicals. Jelena Pesek, PhD student in the Department of Bioorganic Chemistry at the institute, was surprised that the enzyme AAH from M. arborescens differs from DPS enzymes in other microbes to the effect that it additionally regulates the concentration of N-acyl glutamine (conjugates of glutamic acid with fatty acids) in the gut, which are important for molecular plant-insect interactions. Moreover, the enzyme is able to store Fe(III)ions in its center. If free Fe(II) is present, hydrogen peroxide (H2O2), which is synthesized by the insect's intestinal cells to fend off microorganisms, is converted to highly reactive hydroxyl radicals. The process is known as the Fenton's Reaction:
Fe2+ + H2O2 → Fe3+ + OH- + •HO (Fenton's Reaction)
The highly reactive hydroxyl radical •HO damages especially the DNA and thus causes dangerous mutations of the genetic material. In cooperation with Kornelius Zeth from the Max Planck Institute for Developmental Biology in Tuebingen the researchers succeeded in analyzing the iron transport mechanisms by means of crystallization and X-ray structure determination.
The protein consists of 12 identical subunits and has a molecular mass of 204 kDa - a considerable size for a single enzyme. The homo-oligomer is round and hollow inside. It can store up to 500 iron atoms as ferric iron (usually in the form of Fe2O3) in the hollow cavity. The iron transport into the cavity is unique: The spherical protein has four selective pores which provide access only to ferrous iron ions along with their hydration shells (six water molecules). At catalytic ferroxidase centers inside the cavity the Fe(II) is oxidized to Fe(III) with simultaneous reduction of the dangerous H2O2 to water (H2O).
The scientists assume that AAH ensures survival of M. arborescens in the larval gut, where conditions may be harsh and constantly changing depending on food quality. The enzyme is protective against oxidative stress, reducing the concentration of free Fe(II) by storing it and simultaneously neutralizing H2O2 as a source for cell damaging radicals. The evolutionary context of these processes as well as the formation and hydrolysis of N-acyl glutamines which are also catalyzed by AAH are still unknown. Because of their detergent character these compounds may help the larvae to better digest the plant food. In the course of evolution, attacked host plants may have "learned" to exploit the conjugates which enter the leaves during herbivory as a chemical alarm signal in order to activate their defense against the insect pest efficiently. [JWK/AO]Original Publication:
Dr. Jan-Wolfhard Kellmann | Max-Planck-Institut
Newly designed molecule binds nitrogen
23.02.2018 | Julius-Maximilians-Universität Würzburg
Atomic Design by Water
23.02.2018 | Max-Planck-Institut für Eisenforschung GmbH
A newly developed laser technology has enabled physicists in the Laboratory for Attosecond Physics (jointly run by LMU Munich and the Max Planck Institute of Quantum Optics) to generate attosecond bursts of high-energy photons of unprecedented intensity. This has made it possible to observe the interaction of multiple photons in a single such pulse with electrons in the inner orbital shell of an atom.
In order to observe the ultrafast electron motion in the inner shells of atoms with short light pulses, the pulses must not only be ultrashort, but very...
A group of researchers led by Andrea Cavalleri at the Max Planck Institute for Structure and Dynamics of Matter (MPSD) in Hamburg has demonstrated a new method enabling precise measurements of the interatomic forces that hold crystalline solids together. The paper Probing the Interatomic Potential of Solids by Strong-Field Nonlinear Phononics, published online in Nature, explains how a terahertz-frequency laser pulse can drive very large deformations of the crystal.
By measuring the highly unusual atomic trajectories under extreme electromagnetic transients, the MPSD group could reconstruct how rigid the atomic bonds are...
Quantum computers may one day solve algorithmic problems which even the biggest supercomputers today can’t manage. But how do you test a quantum computer to...
For the first time, a team of researchers at the Max-Planck Institute (MPI) for Polymer Research in Mainz, Germany, has succeeded in making an integrated circuit (IC) from just a monolayer of a semiconducting polymer via a bottom-up, self-assembly approach.
In the self-assembly process, the semiconducting polymer arranges itself into an ordered monolayer in a transistor. The transistors are binary switches used...
Breakthrough provides a new concept of the design of molecular motors, sensors and electricity generators at nanoscale
Researchers from the Institute of Organic Chemistry and Biochemistry of the CAS (IOCB Prague), Institute of Physics of the CAS (IP CAS) and Palacký University...
15.02.2018 | Event News
13.02.2018 | Event News
12.02.2018 | Event News
23.02.2018 | Physics and Astronomy
23.02.2018 | Health and Medicine
23.02.2018 | Physics and Astronomy