Forum for Science, Industry and Business

Sponsored by:     3M 
Search our Site:

 

Genomic hitchhikers in birds shed light on evolution of viruses

16.10.2012
The genomes of birds are riddled with DNA sequences from viruses, according to a study to be published on October 16 in mBio®, the online open-access journal of the American Society for Microbiology. Analysis of these viral sequences, known as endogenous retroviruses (ERVs), can provide insights into how both hosts and viruses have evolved over the eons.

"We examined the evolution of avian retroviruses on the basis of their fossil remnants in the three avian genomes that have been completely sequenced," write the authors from Johns Hopkins University and Uppsala University, Sweden. The authors go on to say their analyses of ERVs in chicken, turkey, and zebra finch genomes reveal that birds were a hotbed of viral evolution early in their history.

All genomes are cobbled together works-in-progress. Scientists have long known that the human genome, for example, is not all human: like most every other genome studied to date, a good chunk of the DNA we call "human" is actually made up of proviruses, sequences that retroviruses have deposited there to take advantage of the cell's ability to copy DNA and translate that DNA into working proteins. These proviruses can either be inherited in the DNA we get from our parents (endogenous retroviruses), or they can be picked up during our lifetime (exogenous retroviruses).

The study reveals that millions of years ago birds were host to many different kinds of ERVs, serving as a kind of melting pot: a meeting and mingling place where viruses recombined and shared genetic information.

Unlike early studies of ERVs in chickens, which studied selected segments of the genome and uncovered only alpha-retroviruses, this study used complete genome sequences and found a great diversity of viral sequences in bird genomes, representing the same major groups as those of mammals, but exhibiting more diversity. Most of the ERVs in birds were distinct from those found in other animals, probably indicating that the viruses did not move much between different kinds of hosts.

"We conclude that avian retroviral evolution differs from that of other vertebrates," write the researchers. "Avian retroviruses seem to have evolved rather independently from the rest of the retroviruses over the last 150 million years."

Stepher Goff of Columbia University, who was not involved in the research but edited the article for mBio®, says genome-level studies like this are a boon to virologists.

"This paper is filling a big gap in our understanding of these viruses," says Goff. "This is something that needed to be done, and advancing sequencing technology made it easy to do."

mBio® is an open access online journal published by the American Society for Microbiology to make microbiology research broadly accessible. The focus of the journal is on rapid publication of cutting-edge research spanning the entire spectrum of microbiology and related fields. It can be found online at http://mBio.asm.org.

The American Society for Microbiology is the largest single life science society, composed of over 39,000 scientists and health professionals. ASM's mission is to advance the microbiological sciences as a vehicle for understanding life processes and to apply and communicate this knowledge for the improvement of health and environmental and economic well-being worldwide.

Jim Sliwa | EurekAlert!
Further information:
http://www.asmusa.org

More articles from Life Sciences:

nachricht What the world's tiniest 'monster truck' reveals
23.08.2017 | American Chemical Society

nachricht Treating arthritis with algae
23.08.2017 | Empa - Eidgenössische Materialprüfungs- und Forschungsanstalt

All articles from Life Sciences >>>

The most recent press releases about innovation >>>

Die letzten 5 Focus-News des innovations-reports im Überblick:

Im Focus: Fizzy soda water could be key to clean manufacture of flat wonder material: Graphene

Whether you call it effervescent, fizzy, or sparkling, carbonated water is making a comeback as a beverage. Aside from quenching thirst, researchers at the University of Illinois at Urbana-Champaign have discovered a new use for these "bubbly" concoctions that will have major impact on the manufacturer of the world's thinnest, flattest, and one most useful materials -- graphene.

As graphene's popularity grows as an advanced "wonder" material, the speed and quality at which it can be manufactured will be paramount. With that in mind,...

Im Focus: Exotic quantum states made from light: Physicists create optical “wells” for a super-photon

Physicists at the University of Bonn have managed to create optical hollows and more complex patterns into which the light of a Bose-Einstein condensate flows. The creation of such highly low-loss structures for light is a prerequisite for complex light circuits, such as for quantum information processing for a new generation of computers. The researchers are now presenting their results in the journal Nature Photonics.

Light particles (photons) occur as tiny, indivisible portions. Many thousands of these light portions can be merged to form a single super-photon if they are...

Im Focus: Circular RNA linked to brain function

For the first time, scientists have shown that circular RNA is linked to brain function. When a RNA molecule called Cdr1as was deleted from the genome of mice, the animals had problems filtering out unnecessary information – like patients suffering from neuropsychiatric disorders.

While hundreds of circular RNAs (circRNAs) are abundant in mammalian brains, one big question has remained unanswered: What are they actually good for? In the...

Im Focus: RAVAN CubeSat measures Earth's outgoing energy

An experimental small satellite has successfully collected and delivered data on a key measurement for predicting changes in Earth's climate.

The Radiometer Assessment using Vertically Aligned Nanotubes (RAVAN) CubeSat was launched into low-Earth orbit on Nov. 11, 2016, in order to test new...

Im Focus: Scientists shine new light on the “other high temperature superconductor”

A study led by scientists of the Max Planck Institute for the Structure and Dynamics of Matter (MPSD) at the Center for Free-Electron Laser Science in Hamburg presents evidence of the coexistence of superconductivity and “charge-density-waves” in compounds of the poorly-studied family of bismuthates. This observation opens up new perspectives for a deeper understanding of the phenomenon of high-temperature superconductivity, a topic which is at the core of condensed matter research since more than 30 years. The paper by Nicoletti et al has been published in the PNAS.

Since the beginning of the 20th century, superconductivity had been observed in some metals at temperatures only a few degrees above the absolute zero (minus...

All Focus news of the innovation-report >>>

Anzeige

Anzeige

Event News

Call for Papers – ICNFT 2018, 5th International Conference on New Forming Technology

16.08.2017 | Event News

Sustainability is the business model of tomorrow

04.08.2017 | Event News

Clash of Realities 2017: Registration now open. International Conference at TH Köln

26.07.2017 | Event News

 
Latest News

What the world's tiniest 'monster truck' reveals

23.08.2017 | Life Sciences

Treating arthritis with algae

23.08.2017 | Life Sciences

Witnessing turbulent motion in the atmosphere of a distant star

23.08.2017 | Physics and Astronomy

VideoLinks
B2B-VideoLinks
More VideoLinks >>>