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Diagnostic Mutation DataBase (DMuDB); Great Expectations for Genetic Testing

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12.06.2006

The Diagnostic Mutation Database (DmuDB) was launched by the National Genetics Reference Laboratory (NGRL) in Manchester early 2005, aiming to provide a route for sharing mutation data within and between diagnostic laboratories in the UK and for publishing mutations from diagnostic labs. This project focuses on the development of a repository which allows easy submission of data which can then be shared with other labs while protecting patient confidentiality, and which can be a route to publication of the data. The database is being developed by Andrew Devereau and Ed Burke.

A meeting was held on 24 February at the Nowgen centre in Manchester to discuss the formation of a steering group to oversee the running of the project and develop guidelines to ensure confidence and accountability.

The committee comprises Andrew Devereau and Ed Burke (NGRL Manchester), Graham Taylor (Clinical Molecular Genetics Society), Alastair Brown (MRC Human Genetics Unit, Edinburgh), Dick Cotton (Human Genomic Variation Society, Australia), Ann Curtis (Northern Molecular Genetics Diagnostic Service), Johan den Dunnen (Leiden University Medical Centre), Ian Frayling (All Wales Laboratory Genetics Service, Cardiff), Andrew Read (Emeritus Professor of Human Genetics, University of Manchester) and Melissa Winter (Genetic Interest Group). The group will make policy decisions on issues such as nomenclature standards, access to data, terminology, standardisation of the data and overall project direction. The establishment of a mandate was discussed, and representation on the group and adoption of formal procedures will be addressed before the next meeting in September.

Aside from benefiting diagnostic services, the database will enable the genetic community to look for disease patterns. Andrew Devereau, Informatics Manager at NGRL Manchester, stresses that “The need to share mutation data is being recognised internationally. Diagnostic services in the UK can have an important role to play as sources of high-quality data and we hope that this project will allow them to make their data available as widely as possible, as well as providing a valuable source of data for their work.”

Pilot testing of the repository is underway with sets of data for Neurofibromatosis 1 and 2 (NF1, NF2) and Cystic Fibrosis (CF), a graphical interface being finalised that allows mutations to be mapped to annotated reference sequences.

Diana van Gent | Source: alphagalileo
Further information: www.ngrl.org.uk/Manchester/Downloads/Informatics/DMuDB%20report.pdf

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