Forum for Science, Industry and Business

Sponsored by:     3M 
Search our Site:

 

Make your mobile device live up to its true potential -- as a data collection tool

15.08.2014

Easy Leaf Area software calculates leaf area from digital images

Leaf measurements are often critical in plant physiological and ecological studies, but traditional methods have been time consuming and sometimes destructive to plant samples. Researchers at the University of California, Davis, have developed Easy Leaf Area—a free software written in an open-source programming language—to allow users to accurately measure leaf area from digital images in seconds.

"It has always been a challenge to measure leaf surface area without damaging the plants or spending long hours in the lab, so I decided to attempt to write software to automatically measure leaf and scale area from smartphone images," explains Hsien Ming Easlon, a researcher at UC Davis and one of the developers of Easy Leaf Area. "Leaf area measurements are essential for estimating crop yields, water usage, nutrient absorption, plant competition, and many other aspects of growth."

The digital images he uses are taken with the Apple IPhone 4, but any current smartphone camera or digital camera will do. Once the images are uploaded to a computer, Easy Leaf Area can process hundreds of images and save the results to a spreadsheet-ready CSV file. The Windows executable software is free to download and can be modified to suit specific experimental requirements. A full report including links to additional resources is available in a recent issue of Applications in Plant Sciences.

Easlon recalls, "Our lab started using digital cameras when I was a graduate student. We figured out how to use Photoshop to measure areas in digital images, but this method still required one to five minutes of human input per image."

Five minutes per image may not seem like a long time, but multiply that by hundreds of plants—a normal sample size—and those minutes add up fast. By automating data analysis, researchers can save countless hours of manual labor, improve the accuracy and consistency of their results, and reduce potential damages to their plant samples.

Easlon and his team developed Easy Leaf Area using Arabidopsis plants, and also tested Easy Leaf Area on photographs of field-grown tomatoes and wheat, and photographs and scans of detached leaves of a common tree poppy, California redwood, chaparral currant, Jeffrey pine, and Valley oak. Manual adjustments to the automatic algorithm can be saved for different plants and field conditions, making this a practical tool for researchers in many plant science fields.

Easlon's next step is to develop a mobile version so that leaf area measurements can be made on the fly without a PC. He also plans to add handwriting recognition or barcode reading to the software. This will automatically interpret labeled plant stakes and assign the proper file names to each image.

"Most researchers don't have the time or knowledge to develop software for themselves, so scientific use of smartphones is primarily limited to built-in features. The processing power, connectivity, built-in sensors, storage capacity, and low price give smartphones great potential to replace many single-purpose devices for scientific data collection," explains Easlon.

Calculating plant surface area could soon be as easy as using Instagram.

###

Hsien Ming Easlon and Arnold J. Bloom. 2014. Easy Leaf Area: Automated digital image analysis for rapid and accurate measurement of leaf area. Applications in Plant Sciences 2(7): 1400033. doi:10.3732/apps.1400033

Applications in Plant Sciences (APPS) is a monthly, peer-reviewed, open access journal focusing on new tools, technologies, and protocols in all areas of the plant sciences. It is published by the Botanical Society of America, a nonprofit membership society with a mission to promote botany, the field of basic science dealing with the study and inquiry into the form, function, development, diversity, reproduction, evolution, and uses of plants and their interactions within the biosphere. APPS is available as part of BioOne's Open Access collection .

For further information, please contact the APPS staff at apps@botany.org.

Beth Parada | Eurek Alert!
Further information:
http://www.amjbot.org/

Further reports about: Botany Instagram collection explains images leaf measurements technologies

More articles from Information Technology:

nachricht Secure networks for the Internet of the future
25.08.2016 | Julius-Maximilians-Universität Würzburg

nachricht New microchip demonstrates efficiency and scalable design
23.08.2016 | Princeton University, Engineering School

All articles from Information Technology >>>

The most recent press releases about innovation >>>

Die letzten 5 Focus-News des innovations-reports im Überblick:

Im Focus: Streamlining accelerated computing for industry

PyFR code combines high accuracy with flexibility to resolve unsteady turbulence problems

Scientists and engineers striving to create the next machine-age marvel--whether it be a more aerodynamic rocket, a faster race car, or a higher-efficiency jet...

Im Focus: X-ray optics on a chip

Waveguides are widely used for filtering, confining, guiding, coupling or splitting beams of visible light. However, creating waveguides that could do the same for X-rays has posed tremendous challenges in fabrication, so they are still only in an early stage of development.

In the latest issue of Acta Crystallographica Section A: Foundations and Advances , Sarah Hoffmann-Urlaub and Tim Salditt report the fabrication and testing of...

Im Focus: Piggyback battery for microchips: TU Graz researchers develop new battery concept

Electrochemists at TU Graz have managed to use monocrystalline semiconductor silicon as an active storage electrode in lithium batteries. This enables an integrated power supply to be made for microchips with a rechargeable battery.

Small electrical gadgets, such as mobile phones, tablets or notebooks, are indispensable accompaniments of everyday life. Integrated circuits in the interiors...

Im Focus: UCI physicists confirm possible discovery of fifth force of nature

Light particle could be key to understanding dark matter in universe

Recent findings indicating the possible discovery of a previously unknown subatomic particle may be evidence of a fifth fundamental force of nature, according...

Im Focus: Wi-fi from lasers

White light from lasers demonstrates data speeds of up to 2 GB/s

A nanocrystalline material that rapidly makes white light out of blue light has been developed by KAUST researchers.

All Focus news of the innovation-report >>>

Anzeige

Anzeige

Event News

The energy transition is not possible without Geotechnics

25.08.2016 | Event News

New Ideas for the Shipping Industry

24.08.2016 | Event News

A week of excellence: 22 of the world’s best computer scientists and mathematicians in Heidelberg

12.08.2016 | Event News

 
Latest News

Environmental DNA uncovers biodiversity in rivers

30.08.2016 | Ecology, The Environment and Conservation

Solar houses scientifically evaluated

30.08.2016 | Power and Electrical Engineering

Amazon forests: Biodiversity can help mitigate climate risks

30.08.2016 | Life Sciences

VideoLinks
B2B-VideoLinks
More VideoLinks >>>